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SGCD sarcoglycan delta [ Gallus gallus (chicken) ]

Gene ID: 416251, updated on 17-Aug-2024

Summary

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Symbol
SGCDprovided by CGNC
Full Name
sarcoglycan deltaprovided by CGNC
Primary source
CGNC:2846
See related
Ensembl:ENSGALG00010015483
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: 13
Exon count:
18
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 13 NC_052544.1 (11076000..11434596, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 13 NC_052585.1 (11078514..11436579, complement)

Chromosome 13 - NC_052544.1Genomic Context describing neighboring genes Neighboring gene hepatitis A virus cellular receptor 1 Neighboring gene mediator complex subunit 7 Neighboring gene T cell immunoglobulin and mucin domain containing 4 Neighboring gene uncharacterized LOC100857665 Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene gem nuclear organelle associated protein 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan
Names
sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052544.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    11076000..11434596 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040647163.2 → XP_040503097.1  delta-sarcoglycan isoform X5

    UniProtKB/TrEMBL
    A0A8V0YKY0, A0A8V0YSJ8
    Related
    ENSGALP00010021610.1, ENSGALT00010037229.1
    Conserved Domains (1) summary
    pfam04790
    Location:26 → 235
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_040647162.2 → XP_040503096.1  delta-sarcoglycan isoform X4

    UniProtKB/TrEMBL
    A0A8V0YKY0, A0A8V0YSB6
    Related
    ENSGALP00010021607.1, ENSGALT00010037222.1
    Conserved Domains (1) summary
    pfam04790
    Location:26 → 252
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_040647165.2 → XP_040503099.1  delta-sarcoglycan isoform X7

    UniProtKB/TrEMBL
    A0A8V0YKY0
    Conserved Domains (1) summary
    pfam04790
    Location:26 → 235
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_015293902.4 → XP_015149388.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A8V0YZ13, E1C6L7
    Related
    ENSGALP00010021600.1, ENSGALT00010037211.1
    Conserved Domains (1) summary
    pfam04790
    Location:26 → 280
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  5. XM_046900442.1 → XP_046756398.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A8V0YZ13
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 277
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  6. XM_046900443.1 → XP_046756399.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A8V0YZ13
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 277
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  7. XM_015293900.4 → XP_015149386.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A8V0YZ13, E1C6L7
    Conserved Domains (1) summary
    pfam04790
    Location:26 → 280
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  8. XM_025154986.3 → XP_025010754.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A8V0YZ13
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 277
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  9. XM_015293901.4 → XP_015149387.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A8V0YZ13, E1C6L7
    Conserved Domains (1) summary
    pfam04790
    Location:26 → 280
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  10. XM_046900441.1 → XP_046756397.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A8V0YZ13, E1C6L7

  11. XM_015293905.4 → XP_015149391.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A8V0YZ13
    Related
    ENSGALP00010021575.1, ENSGALT00010037166.1
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 277
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  12. XM_040647164.2 → XP_040503098.1  delta-sarcoglycan isoform X6

    UniProtKB/TrEMBL
    A0A8V0YZ13

  13. XM_040647161.2 → XP_040503095.1  delta-sarcoglycan isoform X3

    UniProtKB/TrEMBL
    A0A8V0YKY0
    Conserved Domains (1) summary
    pfam04790
    Location:26 → 235
    Sarcoglycan_1; Sarcoglycan complex subunit protein

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052585.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    11078514..11436579 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040682681.2 → XP_040538615.1  delta-sarcoglycan isoform X5

    UniProtKB/TrEMBL
    A0A8V0YKY0, A0A8V0YSJ8
    Conserved Domains (1) summary
    pfam04790
    Location:26 → 235
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_040682680.2 → XP_040538614.1  delta-sarcoglycan isoform X4

    UniProtKB/TrEMBL
    A0A8V0YKY0

  3. XM_040682684.2 → XP_040538618.1  delta-sarcoglycan isoform X7

    UniProtKB/TrEMBL
    A0A8V0YKY0
    Conserved Domains (1) summary
    pfam04790
    Location:26 → 235
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_040682672.2 → XP_040538606.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A8V0YZ13, E1C6L7
    Conserved Domains (1) summary
    pfam04790
    Location:26 → 280
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  5. XM_040682678.2 → XP_040538612.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A8V0YZ13
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 277
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  6. XM_046927135.1 → XP_046783091.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A8V0YZ13
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 277
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  7. XM_040682674.2 → XP_040538608.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A8V0YZ13, E1C6L7
    Conserved Domains (1) summary
    pfam04790
    Location:26 → 280
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  8. XM_040682677.2 → XP_040538611.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A8V0YZ13
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 277
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  9. XM_040682673.2 → XP_040538607.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A8V0YZ13, E1C6L7
    Conserved Domains (1) summary
    pfam04790
    Location:26 → 280
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  10. XM_046927133.1 → XP_046783089.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A8V0YZ13, E1C6L7

  11. XM_046927134.1 → XP_046783090.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A8V0YZ13, E1C6L7

  12. XM_040682675.2 → XP_040538609.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A8V0YZ13
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 277
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  13. XM_040682683.2 → XP_040538617.1  delta-sarcoglycan isoform X6

    UniProtKB/TrEMBL
    A0A8V0YZ13

  14. XM_040682679.2 → XP_040538613.1  delta-sarcoglycan isoform X3

    UniProtKB/TrEMBL
    A0A8V0YKY0
    Conserved Domains (1) summary
    pfam04790
    Location:26 → 235
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein Strain
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