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EEFSEC eukaryotic elongation factor, selenocysteine-tRNA specific [ Gallus gallus (chicken) ]

Gene ID: 416021, updated on 17-Aug-2024

Summary

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Symbol
EEFSECprovided by CGNC
Full Name
eukaryotic elongation factor, selenocysteine-tRNA specificprovided by CGNC
Primary source
CGNC:4417
See related
Ensembl:ENSGALG00010026943
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See EEFSEC in Genome Data Viewer
Location:
chromosome: 12
Exon count:
9
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 12 NC_052543.1 (9572889..9690092, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 12 NC_052584.1 (9600902..9717859, complement)

Chromosome 12 - NC_052543.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101750361 Neighboring gene GATA binding protein 2 Neighboring gene DnaJ heat shock protein family (Hsp40) member B8 Neighboring gene microRNA 1572 Neighboring gene uncharacterized LOC121106608 Neighboring gene RuvB like AAA ATPase 1 Neighboring gene Sec61 translocon alpha 1 subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation elongation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in selenocysteine incorporation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
selenocysteine-specific elongation factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052543.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    9572889..9690092 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015293369.4 → XP_015148855.1  selenocysteine-specific elongation factor isoform X2

    Conserved Domains (3) summary
    cd03696
    Location:112 → 194
    SelB_II; Domain II of elongation factor SelB
    cd04094
    Location:199 → 332
    eSelB_III; Domain III of eukaryotic and archaeal elongation factor SelB
    cl38936
    Location:1 → 99
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  2. XM_015293368.4 → XP_015148854.1  selenocysteine-specific elongation factor isoform X1

    UniProtKB/TrEMBL
    A0A3Q3AKC4
    Related
    ENSGALP00010039768.1, ENSGALT00010065335.1
    Conserved Domains (3) summary
    cd01889
    Location:13 → 201
    SelB_euk; SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome
    cd03696
    Location:214 → 296
    SelB_II; Domain II of elongation factor SelB
    cd04094
    Location:301 → 434
    eSelB_III; Domain III of eukaryotic and archaeal elongation factor SelB

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052584.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    9600902..9717859 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040682318.2 → XP_040538252.1  selenocysteine-specific elongation factor isoform X2

    Conserved Domains (3) summary
    cd03696
    Location:112 → 194
    SelB_II; Domain II of elongation factor SelB
    cd04094
    Location:199 → 332
    eSelB_III; Domain III of eukaryotic and archaeal elongation factor SelB
    cl38936
    Location:1 → 99
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  2. XM_040682317.2 → XP_040538251.1  selenocysteine-specific elongation factor isoform X1

    UniProtKB/TrEMBL
    A0A3Q3AKC4
    Conserved Domains (3) summary
    cd01889
    Location:13 → 201
    SelB_euk; SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome
    cd03696
    Location:214 → 296
    SelB_II; Domain II of elongation factor SelB
    cd04094
    Location:301 → 434
    eSelB_III; Domain III of eukaryotic and archaeal elongation factor SelB
Nucleotide Protein
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