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JPH3 junctophilin 3 [ Gallus gallus (chicken) ]

Gene ID: 415830, updated on 17-Aug-2024

Summary

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Official Symbol
JPH3provided by CGNC
Official Full Name
junctophilin 3provided by CGNC
Primary source
CGNC:4321
See related
Ensembl:ENSGALG00010009126
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See JPH3 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
6
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 11 NC_052542.1 (17513285..17556047)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 11 NC_052583.1 (17861357..17904903)

Chromosome 11 - NC_052542.1Genomic Context describing neighboring genes Neighboring gene microtubule associated protein 1 light chain 3 beta Neighboring gene zinc finger CCHC-type containing 14 Neighboring gene uncharacterized LOC124417151 Neighboring gene kelch domain containing 4 Neighboring gene solute carrier family 7 member 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of synaptic plasticity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of junctional membrane complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
junctophilin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052542.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    17513285..17556047
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015292658.4 → XP_015148144.2  junctophilin-3 isoform X1

    UniProtKB/TrEMBL
    A0A1D5P0L8, A0A8V0Y280
    Related
    ENSGALP00010012435.1, ENSGALT00010021753.1
    Conserved Domains (2) summary
    PLN03185
    Location:5 → 144
    PLN03185; phosphatidylinositol phosphate kinase; Provisional
    pfam02493
    Location:311 → 333
    MORN; MORN repeat

  2. XM_040707265.2 → XP_040563199.1  junctophilin-3 isoform X2

    Conserved Domains (1) summary
    PLN03185
    Location:5 → 144
    PLN03185; phosphatidylinositol phosphate kinase; Provisional

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052583.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    17861357..17904903
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040681400.2 → XP_040537334.1  junctophilin-3 isoform X1

    UniProtKB/TrEMBL
    A0A1D5P0L8, A0A8V0Y280
    Conserved Domains (2) summary
    PLN03185
    Location:5 → 144
    PLN03185; phosphatidylinositol phosphate kinase; Provisional
    pfam02493
    Location:311 → 333
    MORN; MORN repeat

  2. XM_040681402.2 → XP_040537336.1  junctophilin-3 isoform X2

    Conserved Domains (1) summary
    PLN03185
    Location:5 → 144
    PLN03185; phosphatidylinositol phosphate kinase; Provisional
Nucleotide Protein
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