U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

HNF4beta hepatic nuclear factor 4beta [ Gallus gallus (chicken) ]

Gene ID: 415820, updated on 10-Oct-2024

Summary

Go to the top of the page Help
Symbol
HNF4betaprovided by CGNC
Full Name
hepatic nuclear factor 4betaprovided by CGNC
Primary source
CGNC:50093
See related
Ensembl:ENSGALG00010009021
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See HNF4beta in Genome Data Viewer
Location:
chromosome: 11
Exon count:
16
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 11 NC_052542.1 (16627650..16661626)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 11 NC_052583.1 (16974774..17008731)

Chromosome 11 - NC_052542.1Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 10 Neighboring gene cysteine rich secretory protein LCCL domain containing 2 Neighboring gene zinc finger DHHC-type containing 7 Neighboring gene uncharacterized LOC776594

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Species-specific mechanisms for cholesterol 7alpha-hydroxylase (CYP7A1) regulation by drugs and bile acids. Handschin C, et al. Arch Biochem Biophys, 2005 Feb 1. PMID 15629111
  2. Expressed sequence tag analysis of Eimeria-stimulated intestinal intraepithelial lymphocytes in chickens. Min W, et al. Mol Biotechnol, 2005 Jun. PMID 15920284
  3. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear steroid receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
hepatic nuclear factor 4beta
Names
hepatic nuclear factor 4 beta
nuclear receptor

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030576.5 → NP_001025747.4  hepatic nuclear factor 4beta

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000248
    UniProtKB/TrEMBL
    A0A8V0XZU7
    Related
    ENSGALP00010012234.1, ENSGALT00010021471.1
    Conserved Domains (2) summary
    cd06931
    Location:161 → 382
    NR_LBD_HNF4_like; The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes
    cd06960
    Location:70 → 145
    NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052542.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    16627650..16661626
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046899487.1 → XP_046755443.1  hepatic nuclear factor 4beta isoform X1

    UniProtKB/TrEMBL
    A0A8V0XZU7

  2. XM_046899488.1 → XP_046755444.1  hepatic nuclear factor 4beta isoform X1

    UniProtKB/TrEMBL
    A0A8V0XZU7

  3. XM_040707091.2 → XP_040563025.1  hepatic nuclear factor 4beta isoform X1

    UniProtKB/TrEMBL
    A0A8V0XZU7, Q5ILG9
    Conserved Domains (2) summary
    cd06931
    Location:161 → 382
    NR_LBD_HNF4_like; The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes
    cd06960
    Location:70 → 145
    NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers

  4. XM_046899489.1 → XP_046755445.1  hepatic nuclear factor 4beta isoform X1

    UniProtKB/TrEMBL
    A0A8V0XZU7

  5. XM_040707092.2 → XP_040563026.1  hepatic nuclear factor 4beta isoform X1

    UniProtKB/TrEMBL
    A0A8V0XZU7, Q5ILG9
    Conserved Domains (2) summary
    cd06931
    Location:161 → 382
    NR_LBD_HNF4_like; The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes
    cd06960
    Location:70 → 145
    NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers

  6. XM_040707093.2 → XP_040563027.1  hepatic nuclear factor 4beta isoform X2

    UniProtKB/TrEMBL
    Q5ILG9
    Conserved Domains (2) summary
    cd06931
    Location:161 → 382
    NR_LBD_HNF4_like; The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes
    cd06960
    Location:70 → 145
    NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052583.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    16974774..17008731
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046925575.1 → XP_046781531.1  hepatic nuclear factor 4beta isoform X1

    UniProtKB/TrEMBL
    A0A8V0XZU7

  2. XM_046925578.1 → XP_046781534.1  hepatic nuclear factor 4beta isoform X1

    UniProtKB/TrEMBL
    A0A8V0XZU7

  3. XM_046925577.1 → XP_046781533.1  hepatic nuclear factor 4beta isoform X1

    UniProtKB/TrEMBL
    A0A8V0XZU7

  4. XM_046925579.1 → XP_046781535.1  hepatic nuclear factor 4beta isoform X1

    UniProtKB/TrEMBL
    A0A8V0XZU7

  5. XM_046925576.1 → XP_046781532.1  hepatic nuclear factor 4beta isoform X1

    UniProtKB/TrEMBL
    A0A8V0XZU7

  6. XM_046925580.1 → XP_046781536.1  hepatic nuclear factor 4beta isoform X2

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials