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EIF3J eukaryotic translation initiation factor 3 subunit J [ Gallus gallus (chicken) ]

Gene ID: 415573, updated on 10-Oct-2024

Summary

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Symbol
EIF3Jprovided by CGNC
Full Name
eukaryotic translation initiation factor 3 subunit Jprovided by CGNC
Primary source
CGNC:6209
See related
Ensembl:ENSGALG00010016304
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
EIF3S1; eIF3-p35; eIF3-alpha
Orthologs
human mouse all
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Genomic context

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See EIF3J in Genome Data Viewer
Location:
chromosome: 10
Exon count:
8
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 10 NC_052541.1 (19786463..19795172, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 10 NC_052582.1 (19650498..19659206, complement)

Chromosome 10 - NC_052541.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 96, member A Neighboring gene vesicle trafficking associated, spatacsin Neighboring gene uncharacterized LOC121111639 Neighboring gene CTD small phosphatase like 2 Neighboring gene uncharacterized LOC107054225 Neighboring gene cancer susceptibility candidate 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables translation initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of eukaryotic translation initiation factor 3 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
eukaryotic translation initiation factor 3 subunit J
Names
eukaryotic translation initiation factor 3, subunit 1 alpha, 35kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012771.3 → NP_001012789.1  eukaryotic translation initiation factor 3 subunit J

    See identical proteins and their annotated locations for NP_001012789.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000246
    UniProtKB/Swiss-Prot
    Q5ZKA4
    UniProtKB/TrEMBL
    A0A8V0Z1Z6
    Related
    ENSGALP00010022644.1, ENSGALT00010039231.1
    Conserved Domains (1) summary
    pfam08597
    Location:6 → 252
    eIF3_subunit; Translation initiation factor eIF3 subunit

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052541.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    19786463..19795172 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015292113.4 → XP_015147599.1  eukaryotic translation initiation factor 3 subunit J isoform X1

    UniProtKB/TrEMBL
    A0A8V0YNQ1, A0A8V0Z1Z6
    Related
    ENSGALP00010022638.1, ENSGALT00010039219.1
    Conserved Domains (1) summary
    pfam08597
    Location:6 → 251
    eIF3_subunit; Translation initiation factor eIF3 subunit

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052582.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    19650498..19659206 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046924946.1 → XP_046780902.1  eukaryotic translation initiation factor 3 subunit J isoform X1

    UniProtKB/TrEMBL
    A0A8V0YNQ1
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5ZKA4.1 GenPept UniProtKB/Swiss-Prot:Q5ZKA4

Gene LinkOut

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