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wipf2b WAS/WASL interacting protein family, member 2b [ Danio rerio (zebrafish) ]

Gene ID: 415255, updated on 2-Nov-2024

Summary

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Official Symbol
wipf2bprovided by ZNC
Official Full Name
WAS/WASL interacting protein family, member 2bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040625-182
See related
Ensembl:ENSDARG00000006712 AllianceGenome:ZFIN:ZDB-GENE-040625-182
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:63914
Summary
Predicted to enable actin binding activity. Orthologous to human WIPF2 (WAS/WASL interacting protein family member 2). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See wipf2b in Genome Data Viewer
Location:
chromosome: 19
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (5604208..5621306)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (5685951..5703054)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137488430 Neighboring gene junction plakoglobin b Neighboring gene alpha(1,3)fucosyltransferase gene 2 Neighboring gene alpha(1,3)fucosyltransferase gene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. An in silico mining for simple sequence repeats from expressed sequence tags of zebrafish, medaka, Fundulus, and Xiphophorus. Ju Z, et al. In Silico Biol, 2005. PMID 16268789
  2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
WAS/WASL-interacting protein family member 2b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002165.1 → NP_001002165.1  WAS/WASL-interacting protein family member 2b

    See identical proteins and their annotated locations for NP_001002165.1

    Status: PROVISIONAL

    Source sequence(s)
    BC071180
    UniProtKB/TrEMBL
    Q6IR48
    Related
    ENSDARP00000011930.6, ENSDART00000011025.7
    Conserved Domains (1) summary
    pfam02205
    Location:36 → 60
    WH2; WH2 motif

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    5604208..5621306
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005173756.5 → XP_005173813.1  WAS/WASL-interacting protein family member 2b isoform X1

    UniProtKB/TrEMBL
    A0A8M2BL17
    Conserved Domains (1) summary
    pfam02205
    Location:36 → 60
    WH2; WH2 motif
Nucleotide Protein Strain
Heading Accession and Version

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