zgc:86896 zgc:86896 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zgc:86896provided by ZNC
Official Full Name: zgc:86896provided by ZNC
Primary source: ZFIN:ZDB-GENE-040625-80
See related: Ensembl:ENSDARG00000090369 AllianceGenome:ZFIN:ZDB-GENE-040625-80
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Predicted to enable actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation. Predicted to be located in actin cytoskeleton and cytoplasm. Predicted to be part of Arp2/3 protein complex. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 3

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	3	NC_007114.7 (36275716..36284156)
105	previous assembly	GRCz10 (GCF_000002035.5)	3	NC_007114.6 (36146083..36154684)

Chromosome 3 - NC_007114.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables actin binding	IEA Inferred from Electronic Annotation more info
enables actin filament binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in Arp2/3 complex-mediated actin nucleation	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within Arp2/3 complex-mediated actin nucleation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of Arp2/3 protein complex	IBA Inferred from Biological aspect of Ancestor more info
part_of Arp2/3 protein complex	IEA Inferred from Electronic Annotation more info
located_in actin cytoskeleton	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytoskeleton	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: uncharacterized protein LOC415190

Names: actin-related protein 2/3 complex subunit 1A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001002100.1 → NP_001002100.1 uncharacterized protein LOC415190

See identical proteins and their annotated locations for NP_001002100.1

Status: PREDICTED

Source sequence(s)

BC071519

UniProtKB/TrEMBL

Q6IQ91

Related

ENSDARP00000123754.1, ENSDART00000149532.3

Conserved Domains (3) summary

COG2319
Location:2 → 241

WD40; WD40 repeat [General function prediction only]

sd00039
Location:11 → 50

7WD40; WD40 repeat [structural motif]

cl02567
Location:45 → 266

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007114.7 Reference GRCz11 Primary Assembly

Range

36275716..36284156

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005164011.5 → XP_005164068.1 uncharacterized protein LOC415190 isoform X1

See identical proteins and their annotated locations for XP_005164068.1

UniProtKB/TrEMBL

A0A8M2BB81, A9JRP8

Related

ENSDARP00000093657.4, ENSDART00000102883.6

Conserved Domains (3) summary

COG2319
Location:2 → 241

WD40; WD40 repeat [General function prediction only]

sd00039
Location:11 → 50

7WD40; WD40 repeat [structural motif]

cl02567
Location:45 → 266

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...