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CL46 collectin -46 [ Bos taurus (domestic cattle) ]

Gene ID: 415114, updated on 4-Oct-2024

Summary

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Gene symbol
CL46
Gene description
collectin -46
See related
BGD:BT12119; Ensembl:ENSBTAG00000006536
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
CL-46
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Genomic context

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See CL46 in Genome Data Viewer
Location:
chromosome: 28
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 28 NC_037355.1 (35466971..35476802)

Chromosome 28 - NC_037355.1Genomic Context describing neighboring genes Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4-like Neighboring gene conglutinin Neighboring gene collectin-46-like Neighboring gene collectin-43

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037355.1 Chromosome 28 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. CL-46, a novel collectin highly expressed in bovine thymus and liver. Hansen S, et al. J Immunol, 2002 Nov 15. PMID 12421952
  2. Conglutinin, CL-43 and CL-46--three bovine collectins. Dec M, et al. Pol J Vet Sci, 2006. PMID 17203746
  3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

General protein information

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Preferred Names
collectin-46
Names
46 kDa collectin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001856.1 → NP_001001856.1  collectin-46 precursor

    See identical proteins and their annotated locations for NP_001001856.1

    Status: PROVISIONAL

    Source sequence(s)
    AF509590
    UniProtKB/Swiss-Prot
    Q8MHZ9
    Related
    ENSBTAP00000018649.6, ENSBTAT00000018649.7
    Conserved Domains (3) summary
    pfam01391
    Location:145 → 204
    Collagen; Collagen triple helix repeat (20 copies)
    pfam09006
    Location:218 → 263
    Surfac_D-trimer; Lung surfactant protein D coiled-coil trimerization
    cl02432
    Location:256 → 371
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037355.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    35466971..35476802
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8MHZ9.1 GenPept UniProtKB/Swiss-Prot:Q8MHZ9

Gene LinkOut

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Molecular Biology Databases
Research Materials