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RT1-CE13 RT1 class I, locus CE13 [ Rattus norvegicus (Norway rat) ]

Gene ID: 414790, updated on 28-Oct-2024

Summary

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Official Symbol
RT1-CE13provided by RGD
Official Full Name
RT1 class I, locus CE13provided by RGD
Primary source
RGD:1359196
See related
AllianceGenome:RGD:1359196
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Lung (RPKM 128.4), Spleen (RPKM 111.4) and 9 other tissues See more
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Genomic context

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See RT1-CE13 in Genome Data Viewer
Location:
20p12
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (3314491..3322815, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (3314830..3318106, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 Unlocalized Scaffold NW_007906368.1 (3928..4540, complement)

Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120098828 Neighboring gene Cdk2ap1-ps7 pseudogene Neighboring gene RT1 class I, locus CE12 Neighboring gene RT1 class I, locus CE14 Neighboring gene uncharacterized LOC120098829 Neighboring gene Cdk2ap1-ps6 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. [Association of HLA antigens with thyrotoxic periodic paralysis]. Liu WH, et al. Zhonghua Nei Ke Za Zhi, 1991 Jul. PMID 1752149
  2. Immune dysfunction and immune restoration disease in HIV patients given highly active antiretroviral therapy. Price P, et al. J Clin Virol, 2001 Oct. PMID 11564593
  3. Profiling of human leukocyte antigens in Eales' disease. Biswas J, et al. Int Ophthalmol, 1997-1998. PMID 9756436
  4. Human leukocyte antigen class I expression. Marker of poor prognosis in uveal melanoma. Blom DJ, et al. Invest Ophthalmol Vis Sci, 1997 Aug. PMID 9286277
  5. Synthetic MHC class I peptide prolongs cardiac survival and attenuates transplant arteriosclerosis in the Lewis-->Fischer 344 model of chronic allograft rejection. Murphy B, et al. Transplantation, 1997 Jul 15. PMID 9233694

See all (41) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
RT1 class I, locus CE13
Names
RT1 class I, CE13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001008836.2 → NP_001008836.1  RT1 class I, locus CE13 precursor

    See identical proteins and their annotated locations for NP_001008836.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000020
    UniProtKB/TrEMBL
    Q6MG31
    Conserved Domains (3) summary
    cd07698
    Location:207 → 299
    IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
    pfam00129
    Location:25 → 203
    MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
    pfam06623
    Location:337 → 364
    MHC_I_C; MHC_I C-terminus

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086038.1 Reference GRCr8

    Range
    3314491..3322815 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063279406.1 → XP_063135476.1  RT1 class I, locus CE13 isoform X2

  2. XM_063279407.1 → XP_063135477.1  RT1 class I, locus CE13 isoform X3

  3. XM_063279408.1 → XP_063135478.1  RT1 class I, locus CE13 isoform X4

    UniProtKB/TrEMBL
    A0A2P1NRY3

  4. XM_063279405.1 → XP_063135475.1  RT1 class I, locus CE13 isoform X1

RNA

  1. XR_010060748.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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