tsc22d2.S TSC22 domain family member 2 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: tsc22d2.S
Official Full Name: TSC22 domain family member 2 S homeolog
Primary source: Xenbase:XB-GENE-978250
Locus tag: XELAEV_18029803mg
See related: EnsemblRapid:ENSXLAG00005003481 AllianceGenome:Xenbase:XB-GENE-978250
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: tsc22d2
Summary: Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Orthologous to human TSC22D2 (TSC22 domain family member 2). [provided by Alliance of Genome Resources, Nov 2024]
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 5S

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	5S	NC_054380.1 (105956203..105990611, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	5S	NC_030733.1 (99197610..99231909, complement)

Chromosome 5S - NC_054380.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by Xenbase

Process	Evidence Code	Pubs
acts_upstream_of_or_within regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: TSC22 domain family member 2 S homeolog

Names: TSC22 domain family, member 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001091281.1 → NP_001084750.1 TSC22 domain family member 2 S homeolog

See identical proteins and their annotated locations for NP_001084750.1

Status: PROVISIONAL

Source sequence(s)

BC068747

UniProtKB/TrEMBL

A0A974CUI1, Q6NU54

Related

ENSXLAP00005010343.1, ENSXLAT00005010509.1

Conserved Domains (1) summary

pfam01166
Location:618 → 672

TSC22; TSC-22/dip/bun family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

105956203..105990611 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_041563978.1 → XP_041419912.1 TSC22 domain family member 2 S homeolog isoform X1

UniProtKB/TrEMBL

A0A8J1KRE8, A0A974CUI1

Related

ENSXLAP00005010341.1, ENSXLAT00005010507.1

Conserved Domains (2) summary

cl01853
Location:647 → 688

YabA; Regulator of replication initiation timing [Replication, recombination and repair]

pfam09606
Location:237 → 540

Med15; ARC105 or Med15 subunit of Mediator complex non-fungal