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atp5pd.S ATP synthase peripheral stalk subunit d S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 414718, updated on 4-Nov-2024

Summary

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Official Symbol
atp5pd.S
Official Full Name
ATP synthase peripheral stalk subunit d S homeolog
Primary source
Xenbase:XB-GENE-17338130
Locus tag
XELAEV_18046688mg
See related
EnsemblRapid:ENSXLAG00005032706 AllianceGenome:Xenbase:XB-GENE-17338130
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
atpq; atp5h; atp5h.S
Summary
Predicted to enable proton-transporting ATP synthase activity, rotational mechanism. Predicted to act upstream of or within proton motive force-driven ATP synthesis and proton transmembrane transport. Predicted to be located in mitochondrial inner membrane. Predicted to be part of proton-transporting ATP synthase complex, coupling factor F(o). Orthologous to human ATP5PD (ATP synthase peripheral stalk subunit d). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See atp5pd.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (39272718..39281534, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (33119584..33128553, complement)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene transfer RNA arginine (anticodon UCG) Neighboring gene BTB/POZ domain-containing protein KCTD2 Neighboring gene uncharacterized LOC121398970 Neighboring gene monocarboxylate transporter 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC82400

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables proton transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
enables proton-transporting ATP synthase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within proton motive force-driven ATP synthesis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  
part_of proton-transporting ATP synthase complex, coupling factor F(o) IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC414718
Names
ATP synthase, H+ transporting, mitochondrial Fo complex subunit D S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091277.1 → NP_001084746.1  uncharacterized protein LOC414718

    See identical proteins and their annotated locations for NP_001084746.1

    Status: PREDICTED

    Source sequence(s)
    BC068884
    UniProtKB/TrEMBL
    A0A974BTT7, Q6NTS1
    Related
    ENSXLAP00005097981.1, ENSXLAT00005099788.1
    Conserved Domains (1) summary
    pfam05873
    Location:11 → 158
    Mt_ATP-synt_D; ATP synthase D chain, mitochondrial (ATP5H)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    39272718..39281534 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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