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gramd1c.S GRAM domain containing 1C S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 414690, updated on 17-Aug-2024

Summary

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Official Symbol
gramd1c.S
Official Full Name
GRAM domain containing 1C S homeolog
Primary source
Xenbase:XB-GENE-17336597
Locus tag
XELAEV_18014438mg
See related
EnsemblRapid:ENSXLAG00005028086
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
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Genomic context

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See gramd1c.S in Genome Data Viewer
Location:
chromosome: 2S
Exon count:
21
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (27827055..27883719, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (27742720..27781622, complement)

Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene TATA-box binding protein associated factor 13 S homeolog Neighboring gene NDC80 kinetochore complex component S homeolog Neighboring gene ATPase H+ transporting V1 subunit A S homeolog Neighboring gene N(alpha)-acetyltransferase 50, NatE catalytic subunit S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC81152

General protein information

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Preferred Names
uncharacterized protein LOC414690

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091256.1 → NP_001084725.1  uncharacterized protein LOC414690

    See identical proteins and their annotated locations for NP_001084725.1

    Status: PREDICTED

    Source sequence(s)
    BC068713
    UniProtKB/TrEMBL
    A0A974HV48, Q6NU85
    Related
    ENSXLAP00005083688.1, ENSXLAT00005085326.1
    Conserved Domains (1) summary
    pfam16016
    Location:128 → 274
    DUF4782; Domain of unknown function (DUF4782)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    27827055..27883719 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041583068.1 → XP_041439002.1  uncharacterized protein LOC414690 isoform X1

    UniProtKB/TrEMBL
    A0A8J1MBC4
    Related
    ENSXLAP00005084191.1, ENSXLAT00005085841.1
    Conserved Domains (1) summary
    cd13220
    Location:88 → 181
    PH-GRAM_GRAMDC; GRAM domain-containing protein (GRAMDC) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

  2. XM_018248176.2 → XP_018103665.1  uncharacterized protein LOC414690 isoform X2

    UniProtKB/TrEMBL
    A0A8J0UA23
    Related
    ENSXLAP00005084116.1, ENSXLAT00005085763.1

  3. XM_018248177.2 → XP_018103666.1  uncharacterized protein LOC414690 isoform X3

    UniProtKB/TrEMBL
    A0A8J0UGR6
    Related
    ENSXLAP00005084022.1, ENSXLAT00005085670.1
Nucleotide Protein Strain
Heading Accession and Version

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