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lsm8.S LSM8 homolog, U6 small nuclear RNA associated S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 414679, updated on 17-Aug-2024

Summary

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Official Symbol
lsm8.S
Official Full Name
LSM8 homolog, U6 small nuclear RNA associated S homeolog
Primary source
Xenbase:XB-GENE-986009
Locus tag
XELAEV_18021064mg
See related
EnsemblRapid:ENSXLAG00005009527
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
lsm8; naa38; lsm8/naa38
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Genomic context

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See lsm8.S in Genome Data Viewer
Location:
chromosome: 3S
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (79767957..79773099, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3S NC_030729.1 (78316816..78321958, complement)

Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene potassium channel, voltage gated Shal related subfamily D, member 2 S homeolog Neighboring gene ankyrin repeat domain-containing protein 26 Neighboring gene cortactin-binding protein 2-like Neighboring gene cystic fibrosis transmembrane conductance regulator S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC82379

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within RNA splicing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
  
part_of U6 snRNP IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
  
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
LSM8 homolog, U6 small nuclear RNA associated S homeolog
Names
N(alpha)-acetyltransferase 38, NatC auxiliary subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091246.1 → NP_001084715.1  LSM8 homolog, U6 small nuclear RNA associated S homeolog

    See identical proteins and their annotated locations for NP_001084715.1

    Status: PROVISIONAL

    Source sequence(s)
    BC068881
    UniProtKB/TrEMBL
    A0A974HRA7, Q6NTS4
    Related
    ENSXLAP00005027857.1, ENSXLAT00005028591.1
    Conserved Domains (1) summary
    cd01727
    Location:2 → 92
    LSm8; Like-Sm protein 8

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    79767957..79773099 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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