XB5765006.S provisional ortholog of tripartite motif containing 25 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Symbol: XB5765006.S
Full Name: provisional ortholog of tripartite motif containing 25 S homeolog
Primary source: Xenbase:XB-GENE-5765008
Locus tag: XELAEV_18015183mg
See related: EnsemblRapid:ENSXLAG00005004667 AllianceGenome:Xenbase:XB-GENE-5765008
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: LOC100489074.L; LOC100489074.S
Summary: Predicted to enable zinc ion binding activity. Predicted to act upstream of or within immune system process. Is expressed in genital system. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 2S

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	2S	NC_054374.1 (75276355..75280223)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	2S	NC_030727.1 (68062365..68066233)

Chromosome 2S - NC_054374.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within immune system process	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: uncharacterized protein LOC414660

Names: E3 ubiquitin/ISG15 ligase TRIM25-like L homeolog; E3 ubiquitin/ISG15 ligase TRIM25-like S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001091230.1 → NP_001084699.2 uncharacterized protein LOC414660

Status: PREDICTED

Source sequence(s)

BC068676

UniProtKB/TrEMBL

A0A8J0PTJ8, A0A974DJC4

Related

ENSXLAP00005013982.1, ENSXLAT00005014164.1

Conserved Domains (4) summary

smart00336
Location:136 → 177

BBOX; B-Box-type zinc finger

cd00162
Location:11 → 58

RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

cd12891
Location:351 → 517

SPRY_PRY_C-I_2; PRY/SPRY domain in tripartite motif-containing (TRIM) proteins, including TRIM14-like, TRIM16-like, TRIM25-like, TRIM47-like, TRIM65 and RNF135, and stonustoxin

cl23765
Location:184 → 294

iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits