zranb1.S zinc finger RANBP2-type containing 1 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: zranb1.S
Official Full Name: zinc finger RANBP2-type containing 1 S homeolog
Primary source: Xenbase:XB-GENE-6252281
Locus tag: XELAEV_18036846mg
See related: EnsemblRapid:ENSXLAG00005012309
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: trabid; zranb1; zranb1-a; zranb1-b
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Genomic context

Location:: chromosome: 7S

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	7S	NC_054384.1 (11429747..11479922, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	7S	NC_030737.1 (11412628..11463061, complement)

Chromosome 7S - NC_054384.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables cysteine-type deubiquitinase activity	IEA Inferred from Electronic Annotation more info
enables cysteine-type deubiquitinase activity	ISS Inferred from Sequence or Structural Similarity more info
enables cysteine-type peptidase activity	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within Wnt signaling pathway	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within cell migration	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within cytoskeleton organization	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within positive regulation of Wnt signaling pathway	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within protein K29-linked deubiquitination	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within protein K33-linked deubiquitination	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within protein K63-linked deubiquitination	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within proteolysis	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of cell morphogenesis	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
is_active_in cytoplasm	ISS Inferred from Sequence or Structural Similarity more info
located_in cytoplasm	ISS Inferred from Sequence or Structural Similarity more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
is_active_in nucleus	ISS Inferred from Sequence or Structural Similarity more info
located_in nucleus	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: ubiquitin thioesterase zranb1-B

Names: Zinc finger Ran-binding domain-containing protein 1B; zinc finger, RAN-binding domain containing 1 S homeolog

NP_001084698.1

EC 3.4.19.12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001091229.1 → NP_001084698.1 ubiquitin thioesterase zranb1-B

See identical proteins and their annotated locations for NP_001084698.1

Status: PROVISIONAL

Source sequence(s)

BC068679

UniProtKB/Swiss-Prot

Q6NUB7

UniProtKB/TrEMBL

A0A974CC10

Related

ENSXLAP00005036088.1, ENSXLAT00005036988.1

Conserved Domains (3) summary

smart00547
Location:147 → 170

ZnF_RBZ; Zinc finger domain

sd00029
Location:83 → 102

zf-RanBP2; RanBP2-type Zn finger [structural motif]

pfam02338
Location:431 → 579

OTU; OTU-like cysteine protease

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054384.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

11429747..11479922 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)