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tbcb.L tubulin folding cofactor B L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 414650, updated on 4-Nov-2024

Summary

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Official Symbol
tbcb.L
Official Full Name
tubulin folding cofactor B L homeolog
Primary source
Xenbase:XB-GENE-17335494
Locus tag
XELAEV_18039093mg
See related
AllianceGenome:Xenbase:XB-GENE-17335494
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ckap1
Summary
Predicted to enable alpha-tubulin binding activity and microtubule plus-end binding activity. Predicted to act upstream of or within cytoplasmic microtubule organization; post-chaperonin tubulin folding pathway; and tubulin complex assembly. Predicted to be located in cytoplasm; microtubule plus-end; and nucleus. Orthologous to human TBCB (tubulin folding cofactor B). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See tbcb.L in Genome Data Viewer
Location:
chromosome: 8L
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (63249021..63256005, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (50064662..50071654, complement)

Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene biogenesis of lysosomal organelles complex-1, subunit 3 L homeolog Neighboring gene NTPase KAP family P-loop domain-containing protein 1 Neighboring gene degenerative spermatocyte homolog 3, lipid desaturase L homeolog Neighboring gene polymerase (RNA) II subunit I L homeolog Neighboring gene ovo-like zinc finger 3 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC81145

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables alpha-tubulin binding IEA
Inferred from Electronic Annotation
more info
  
enables microtubule plus-end binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cytoplasmic microtubule organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within post-chaperonin tubulin folding pathway IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within tubulin complex assembly IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in microtubule plus-end IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC414650

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091220.1 → NP_001084689.1  uncharacterized protein LOC414650

    See identical proteins and their annotated locations for NP_001084689.1

    Status: PREDICTED

    Source sequence(s)
    BC068710
    UniProtKB/TrEMBL
    A0A974H7I1, Q6NU87
    Conserved Domains (2) summary
    cd01789
    Location:11 → 94
    Alp11_N; Ubiquitin-like domain of Alp11 tubulin-folding cofactor B
    pfam01302
    Location:163 → 230
    CAP_GLY; CAP-Gly domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    63249021..63256005 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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