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capn5.S calpain 5 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 414629, updated on 18-Sep-2024

Summary

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Official Symbol
capn5.S
Official Full Name
calpain 5 S homeolog
Primary source
Xenbase:XB-GENE-17346164
Locus tag
XELAEV_18016388mg
See related
EnsemblRapid:ENSXLAG00005000285
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
htra3; ncl-3
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Genomic context

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See capn5.S in Genome Data Viewer
Location:
chromosome: 2S
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (163572952..163625803, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (154204220..154245845, complement)

Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene RELT, TNF receptor S homeolog Neighboring gene Rho guanine nucleotide exchange factor 17 S homeolog Neighboring gene uncharacterized LOC121400728 Neighboring gene olfactory marker protein S homeolog Neighboring gene alkaline ceramidase 3 S homeolog Neighboring gene tsukushi, small leucine rich proteoglycan S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC81349

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
enables cysteine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within proteolysis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC414629

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091200.1 → NP_001084669.1  uncharacterized protein LOC414629

    See identical proteins and their annotated locations for NP_001084669.1

    Status: PREDICTED

    Source sequence(s)
    BC068792
    UniProtKB/TrEMBL
    A0A974DSV7, Q6NU10
    Related
    ENSXLAP00005000780.1, ENSXLAT00005000807.1
    Conserved Domains (3) summary
    cd04046
    Location:515 → 640
    C2_Calpain; C2 domain present in Calpain proteins
    pfam00648
    Location:27 → 341
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:354 → 493
    Calpain_III; Calpain large subunit, domain III

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    163572952..163625803 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041583067.1 → XP_041439001.1  uncharacterized protein LOC414629 isoform X1

    UniProtKB/TrEMBL
    A0A1L8HB59, A0A974DKF5, A0A974DSV7
    Related
    ENSXLAP00005000783.1, ENSXLAT00005000810.1
    Conserved Domains (3) summary
    cd04046
    Location:515 → 640
    C2_Calpain; C2 domain present in Calpain proteins
    pfam00648
    Location:27 → 341
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:362 → 488
    Calpain_III; Calpain large subunit, domain III
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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