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stambpl1.S STAM binding protein like 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 414627, updated on 4-Nov-2024

Summary

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Official Symbol
stambpl1.S
Official Full Name
STAM binding protein like 1 S homeolog
Primary source
Xenbase:XB-GENE-17335976
Locus tag
XELAEV_18036759mg
See related
EnsemblRapid:ENSXLAG00005018943 AllianceGenome:Xenbase:XB-GENE-17335976
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Predicted to enable K63-linked deubiquitinase activity and metal-dependent deubiquitinase activity. Predicted to act upstream of or within protein K63-linked deubiquitination. Predicted to be located in endosome and membrane. Orthologous to human STAMBPL1 (STAM binding protein like 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See stambpl1.S in Genome Data Viewer
Location:
chromosome: 7S
Exon count:
15
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7S NC_054384.1 (5430353..5480449, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7S NC_030737.1 (5449974..5500171, complement)

Chromosome 7S - NC_054384.1Genomic Context describing neighboring genes Neighboring gene Fas cell surface death receptor S homeolog Neighboring gene actin, alpha 2, smooth muscle, aorta S homeolog Neighboring gene ankyrin repeat domain 22 S homeolog Neighboring gene small nucleolar RNA U85 Neighboring gene phosphatase and tensin homolog S homeolog Neighboring gene ATPase family, AAA domain containing 1 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC81376

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables K63-linked deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal-dependent deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein K63-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC414627

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091198.1 → NP_001084667.1  uncharacterized protein LOC414627

    See identical proteins and their annotated locations for NP_001084667.1

    Status: PREDICTED

    Source sequence(s)
    BC068799
    UniProtKB/TrEMBL
    A0A974CAW7, Q6NU03
    Related
    ENSXLAP00005055923.1, ENSXLAT00005057152.1
    Conserved Domains (2) summary
    cd08066
    Location:261 → 431
    MPN_AMSH_like; Mov34/MPN/PAD-1 family
    pfam08969
    Location:28 → 131
    USP8_dimer; USP8 dimerization domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054384.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    5430353..5480449 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018226892.2 → XP_018082381.2  uncharacterized protein LOC414627 isoform X1

    UniProtKB/TrEMBL
    A0A8J0TEA0
    Related
    ENSXLAP00005055926.1, ENSXLAT00005057155.1
    Conserved Domains (3) summary
    cd08066
    Location:376 → 546
    MPN_AMSH_like; Mov34/MPN/PAD-1 family
    PLN02872
    Location:19 → 90
    PLN02872; triacylglycerol lipase
    COG0544
    Location:182 → 316
    Tig; FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein Strain
Heading Accession and Version

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