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ddx47.S DEAD-box helicase 47 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 414610, updated on 4-Nov-2024

Summary

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Official Symbol
ddx47.S
Official Full Name
DEAD-box helicase 47 S homeolog
Primary source
Xenbase:XB-GENE-17346688
Locus tag
XELAEV_18025576mg
See related
EnsemblRapid:ENSXLAG00005008824 AllianceGenome:Xenbase:XB-GENE-17346688
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Orthologous to human DDX47 (DEAD-box helicase 47). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ddx47.S in Genome Data Viewer
Location:
chromosome: 4S
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (94999305..95010651, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (88672102..88683449, complement)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene ring-box 1, E3 ubiquitin protein ligase S homeolog Neighboring gene G protein-coupled receptor, class C, group 5, member A S homeolog Neighboring gene apolipoprotein L domain containing 1 S homeolog Neighboring gene bone morphogenetic protein/retinoic acid inducible neural-specific 3 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC81500

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX47; uncharacterized protein LOC414610

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    94999305..95010651 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041561591.1 → XP_041417525.1  probable ATP-dependent RNA helicase DDX47 isoform X1

    UniProtKB/TrEMBL
    A0A1L8GGU4, A0A974D2P6
    Related
    ENSXLAP00005025703.1, ENSXLAT00005026415.1
    Conserved Domains (2) summary
    COG0513
    Location:19 → 448
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd17954
    Location:40 → 242
    DEADc_DDX47; DEAD-box helicase domain of DEAD box protein 47

  2. XM_041561592.1 → XP_041417526.1  probable ATP-dependent RNA helicase DDX47 isoform X2

    UniProtKB/TrEMBL
    A0A8J1KJP0
    Related
    ENSXLAP00005025718.1, ENSXLAT00005026431.1
    Conserved Domains (2) summary
    cd18787
    Location:253 → 336
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd17954
    Location:40 → 242
    DEADc_DDX47; DEAD-box helicase domain of DEAD box protein 47

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001091182.1: Suppressed sequence

    Description
    NM_001091182.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version

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