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psme3.L proteasome activator subunit 3 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 414608, updated on 4-Nov-2024

Summary

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Official Symbol
psme3.L
Official Full Name
proteasome activator subunit 3 L homeolog
Primary source
Xenbase:XB-GENE-17339441
Locus tag
XELAEV_18043830mg
See related
EnsemblRapid:ENSXLAG00005029617 AllianceGenome:Xenbase:XB-GENE-17339441
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
psme3; comp58
Summary
Predicted to enable endopeptidase activator activity. Predicted to act upstream of or within positive regulation of endopeptidase activity; regulation of G1/S transition of mitotic cell cycle; and regulation of proteasomal protein catabolic process. Predicted to be located in cytoplasm and nucleoplasm. Predicted to be part of proteasome activator complex. Orthologous to human PSME3 (proteasome activator subunit 3). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See psme3.L in Genome Data Viewer
Location:
chromosome: 9_10L
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (34557868..34575874)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (28864495..28882513)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121397914 Neighboring gene zinc phosphodiesterase ELAC protein 2 Neighboring gene amine oxidase, copper containing 3 L homeolog Neighboring gene membrane primary amine oxidase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An atlas of differential gene expression during early Xenopus embryogenesis. Pollet N, et al. Mech Dev, 2005 Mar. PMID 15763213
  2. Axeldb: a Xenopus laevis database focusing on gene expression. Pollet N, et al. Nucleic Acids Res, 2000 Jan 1. PMID 10592204, Free PMC Article
  3. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC81513

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables endopeptidase activator activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within positive regulation of endopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of G1/S transition of mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of proteasomal protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
  
part_of proteasome activator complex IEA
Inferred from Electronic Annotation
more info
  
part_of proteasome complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
proteasome activator subunit 3 L homeolog
Names
proteaseome 28 subunit, 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091180.1 → NP_001084649.1  proteasome activator subunit 3 L homeolog

    See identical proteins and their annotated locations for NP_001084649.1

    Status: PROVISIONAL

    Source sequence(s)
    BC068852
    UniProtKB/TrEMBL
    A0A974BXN6, Q6NTV2
    Related
    ENSXLAP00005088730.1, ENSXLAT00005090400.1
    Conserved Domains (2) summary
    pfam02251
    Location:12 → 68
    PA28_alpha; Proteasome activator pa28 alpha subunit
    pfam02252
    Location:111 → 252
    PA28_beta; Proteasome activator pa28 beta subunit

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    34557868..34575874
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041575570.1 → XP_041431504.1  proteasome activator subunit 3 L homeolog isoform X4

    UniProtKB/TrEMBL
    A0A8J1LQH6
    Related
    ENSXLAP00005088796.1, ENSXLAT00005090465.1

  2. XM_018234228.2 → XP_018089717.1  proteasome activator subunit 3 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0TJ77

  3. XM_018234229.2 → XP_018089718.1  proteasome activator subunit 3 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0TRT8
    Related
    ENSXLAP00005088850.1, ENSXLAT00005090519.1

  4. XM_041575569.1 → XP_041431503.1  proteasome activator subunit 3 L homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J1LPK1

  5. XM_018234230.2 → XP_018089719.1  proteasome activator subunit 3 L homeolog isoform X5

    UniProtKB/TrEMBL
    A0A8J0TSW7
Nucleotide Protein Strain
Heading Accession and Version

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