sgms1.S sphingomyelin synthase 1 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: sgms1.S
Official Full Name: sphingomyelin synthase 1 S homeolog
Primary source: Xenbase:XB-GENE-986776
Locus tag: XELAEV_18036772mg
See related: EnsemblRapid:ENSXLAG00005019101
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: sgms1
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Genomic context

Location:: chromosome: 7S

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	7S	NC_054384.1 (5844077..5882104)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	7S	NC_030737.1 (5866871..5905070)

Chromosome 7S - NC_054384.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables ceramide cholinephosphotransferase activity	IEA Inferred from Electronic Annotation more info
enables phosphotransferase activity, for other substituted phosphate groups	IEA Inferred from Electronic Annotation more info
enables sphingomyelin synthase activity	IEA Inferred from Electronic Annotation more info
enables transferase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within apoptotic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within ceramide biosynthetic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within sphingolipid metabolic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within sphingomyelin biosynthetic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in Golgi apparatus	IEA Inferred from Electronic Annotation more info
located_in Golgi membrane	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: sphingomyelin synthase 1 S homeolog

NP_001084610.1

EC 2.7.8.27

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001091141.1 → NP_001084610.1 sphingomyelin synthase 1 S homeolog

See identical proteins and their annotated locations for NP_001084610.1

Status: PROVISIONAL

Source sequence(s)

BC068821

UniProtKB/TrEMBL

A0A974CB42, Q6NTY1

Related

ENSXLAP00005056368.1, ENSXLAT00005057604.1

Conserved Domains (3) summary

cd09514
Location:1 → 72

SAM_SGMS1; SAM domain of sphingomyelin synthase

smart00454
Location:6 → 68

SAM; Sterile alpha motif

pfam14360
Location:274 → 347

PAP2_C; PAP2 superfamily C-terminal