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cnot10.S CCR4-NOT transcription complex subunit 10 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 414534, updated on 4-Nov-2024

Summary

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Official Symbol
cnot10.S
Official Full Name
CCR4-NOT transcription complex subunit 10 S homeolog
Primary source
Xenbase:XB-GENE-5755077
Locus tag
XELAEV_18033153mg
See related
EnsemblRapid:ENSXLAG00005020125 AllianceGenome:Xenbase:XB-GENE-5755077
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
cnot10; cnot10-a; cnot10-b
Summary
Predicted to act upstream of or within mRNA catabolic process; negative regulation of translation; and regulatory ncRNA-mediated gene silencing. Predicted to be located in cytoplasm and nucleus. Predicted to be part of CCR4-NOT complex. Orthologous to human CNOT10 (CCR4-NOT transcription complex subunit 10). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See cnot10.S in Genome Data Viewer
Location:
chromosome: 6S
Exon count:
22
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6S NC_054382.1 (42871545..42943240)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6S NC_030735.1 (41791794..41863709)

Chromosome 6S - NC_054382.1Genomic Context describing neighboring genes Neighboring gene CKLF-like MARVEL transmembrane domain containing 6 S homeolog Neighboring gene dynein cytoplasmic 1 light intermediate chain 1 S homeolog Neighboring gene tripartite motif containing 71, E3 ubiquitin protein ligase S homeolog Neighboring gene uncharacterized LOC121395234

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC81242

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within negative regulation of translation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of translation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulatory ncRNA-mediated gene silencing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
  
part_of CCR4-NOT complex ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 10-B
Names
CCR4-NOT transcription complex, subunit 10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091113.1 → NP_001084582.1  CCR4-NOT transcription complex subunit 10-B

    See identical proteins and their annotated locations for NP_001084582.1

    Status: PROVISIONAL

    Source sequence(s)
    BC068748
    UniProtKB/Swiss-Prot
    Q6NU53
    UniProtKB/TrEMBL
    A0A974CMH4, A0A974HDQ4
    Related
    ENSXLAP00005059156.1, ENSXLAT00005060595.1
    Conserved Domains (1) summary
    sd00006
    Location:299 → 324
    TPR; TPR repeat [structural motif]

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    42871545..42943240
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041567124.1 → XP_041423058.1  CCR4-NOT transcription complex subunit 10-B isoform X1

    UniProtKB/TrEMBL
    A0A8J1L0H9, A0A974CMH4
    Related
    ENSXLAP00005059177.1, ENSXLAT00005060616.1
    Conserved Domains (1) summary
    sd00006
    Location:340 → 365
    TPR; TPR repeat [structural motif]

  2. XM_041567123.1 → XP_041423057.1  CCR4-NOT transcription complex subunit 10-B isoform X1

    UniProtKB/TrEMBL
    A0A8J1L0H9, A0A974CMH4
    Conserved Domains (1) summary
    sd00006
    Location:340 → 365
    TPR; TPR repeat [structural motif]

  3. XM_041567125.1 → XP_041423059.1  CCR4-NOT transcription complex subunit 10-B isoform X3

    UniProtKB/TrEMBL
    A0A8J1L230, A0A974CMH4
    Related
    ENSXLAP00005059189.1, ENSXLAT00005060628.1
    Conserved Domains (1) summary
    sd00006
    Location:315 → 340
    TPR; TPR repeat [structural motif]

  4. XM_018268668.1 → XP_018124157.1  CCR4-NOT transcription complex subunit 10-B isoform X2

    UniProtKB/TrEMBL
    A0A1L8FRK1, A0A974CMH4, A0A974HDS1
    Related
    ENSXLAP00005059148.1, ENSXLAT00005060587.1
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6NU53.1 GenPept UniProtKB/Swiss-Prot:Q6NU53

Gene LinkOut

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