zswim4.S zinc finger SWIM-type containing 4 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: zswim4.S
Official Full Name: zinc finger SWIM-type containing 4 S homeolog
Primary source: Xenbase:XB-GENE-6252566
Locus tag: XELAEV_18000826mg
See related: EnsemblRapid:ENSXLAG00005011461 AllianceGenome:Xenbase:XB-GENE-6252566
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: zswim5
Summary: Predicted to enable zinc ion binding activity. Predicted to be part of Cul2-RING ubiquitin ligase complex. Is expressed in ectoderm; nervous system; and visual system. Orthologous to human ZSWIM4 (zinc finger SWIM-type containing 4). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 3S

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	3S	NC_054376.1 (126006078..126022952, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	Unplaced Scaffold	NW_016694811.1 (2512015..2529861, complement)

Chromosome 3S - NC_054376.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of Cul2-RING ubiquitin ligase complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: zinc finger SWIM-type containing 4 S homeolog

Names: zinc finger, SWIM-type containing 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001091107.1 → NP_001084576.1 zinc finger SWIM-type containing 4 S homeolog

See identical proteins and their annotated locations for NP_001084576.1

Status: PROVISIONAL

Source sequence(s)

BC068772

UniProtKB/TrEMBL

Q6NU30

Related

ENSXLAP00005033511.1, ENSXLAT00005034350.1

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

126006078..126022952 complement

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GenBank, FASTA, Sequence Viewer (Graphics)