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pdik1l.S PDLIM1 interacting kinase 1 like S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 414486, updated on 18-Sep-2024

Summary

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Official Symbol
pdik1l.S
Official Full Name
PDLIM1 interacting kinase 1 like S homeolog
Primary source
Xenbase:XB-GENE-6252837
Locus tag
XELAEV_18015042mg
See related
EnsemblRapid:ENSXLAG00005008142
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
pdik1l; pdik1-a; pdik1l-a; pdik1l-b
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Genomic context

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See pdik1l.S in Genome Data Viewer
Location:
chromosome: 2S
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (66680069..66686427)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (62469154..62475504)

Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 30 member 2 S homeolog Neighboring gene tripartite motif containing 63 S homeolog Neighboring gene family with sequence similarity 110 member D S homeolog Neighboring gene uncharacterized protein C1orf232-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC81252

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables histone H2AS1 kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein serine kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within phosphorylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein phosphorylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
serine/threonine-protein kinase pdik1l-A
NP_001084539.1
XP_018103653.1
XP_018103654.1
XP_041438995.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091070.1 → NP_001084539.1  serine/threonine-protein kinase pdik1l-A

    See identical proteins and their annotated locations for NP_001084539.1

    Status: PROVISIONAL

    Source sequence(s)
    BC068754
    UniProtKB/Swiss-Prot
    Q6NU47
    UniProtKB/TrEMBL
    A0A1L8H7D6, A0A974DJI5
    Related
    ENSXLAP00005023359.1, ENSXLAT00005024064.1
    Conserved Domains (1) summary
    cd13977
    Location:7 → 329
    STKc_PDIK1L; Catalytic domain of the Serine/Threonine kinase, PDLIM1 interacting kinase 1 like

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    66680069..66686427
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041583061.1 → XP_041438995.1  serine/threonine-protein kinase pdik1l-A isoform X1

    UniProtKB/Swiss-Prot
    Q6NU47
    UniProtKB/TrEMBL
    A0A1L8H7D6, A0A974DJI5
    Conserved Domains (1) summary
    cd13977
    Location:7 → 329
    STKc_PDIK1L; Catalytic domain of the Serine/Threonine kinase, PDLIM1 interacting kinase 1 like

  2. XM_018248164.2 → XP_018103653.1  serine/threonine-protein kinase pdik1l-A isoform X1

    UniProtKB/Swiss-Prot
    Q6NU47
    UniProtKB/TrEMBL
    A0A1L8H7D6, A0A974DJI5
    Conserved Domains (1) summary
    cd13977
    Location:7 → 329
    STKc_PDIK1L; Catalytic domain of the Serine/Threonine kinase, PDLIM1 interacting kinase 1 like

  3. XM_018248165.2 → XP_018103654.1  serine/threonine-protein kinase pdik1l-A isoform X1

    UniProtKB/Swiss-Prot
    Q6NU47
    UniProtKB/TrEMBL
    A0A1L8H7D6, A0A974DJI5
    Conserved Domains (1) summary
    cd13977
    Location:7 → 329
    STKc_PDIK1L; Catalytic domain of the Serine/Threonine kinase, PDLIM1 interacting kinase 1 like
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6NU47.1 GenPept UniProtKB/Swiss-Prot:Q6NU47

Gene LinkOut

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