gabarap.L GABA(A) receptor-associated protein L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: gabarap.L
Official Full Name: GABA(A) receptor-associated protein L homeolog
Primary source: Xenbase:XB-GENE-6252840
See related: AllianceGenome:Xenbase:XB-GENE-6252840
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: mm46; GABAA; gabarap
Summary: Predicted to enable GABA receptor binding activity and ubiquitin protein ligase binding activity. Predicted to act upstream of or within autophagosome assembly; autophagy of mitochondrion; and cellular response to nitrogen starvation. Predicted to be located in several cellular components, including bounding membrane of organelle; cytoplasmic vesicle; and cytosol. [provided by Alliance of Genome Resources, Nov 2024]
Annotation information: Annotation category: partial on reference assembly
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Genomic context

Location:: chromosome: 3L

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	3L	NC_054375.1 (161017532..161024334, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	3L	NC_030728.1 (143879473..143881383, complement)

Chromosome 3L - NC_054375.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The desensitization pathway of GABAA receptors, one subunit at a time.
Title: The desensitization pathway of GABA(A) receptors, one subunit at a time.

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables GABA receptor binding	IEA Inferred from Electronic Annotation more info
enables ubiquitin protein ligase binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within autophagosome assembly	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within autophagy	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within autophagy of mitochondrion	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within cellular response to nitrogen starvation	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within macroautophagy	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in Golgi membrane	IEA Inferred from Electronic Annotation more info
located_in autophagosome	IEA Inferred from Electronic Annotation more info
located_in autophagosome membrane	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytoplasmic vesicle	IEA Inferred from Electronic Annotation more info
located_in cytoskeleton	IEA Inferred from Electronic Annotation more info
located_in cytosol	IEA Inferred from Electronic Annotation more info
located_in endomembrane system	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in vesicle	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: uncharacterized protein LOC414477

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001091061.1 → NP_001084530.1 uncharacterized protein LOC414477

See identical proteins and their annotated locations for NP_001084530.1

Status: PREDICTED

Source sequence(s)

BC068621

UniProtKB/TrEMBL

Q6NUG7

Conserved Domains (1) summary

cd17232
Location:2 → 116

Ubl_ATG8_GABARAP; ubiquitin-like (Ubl) domain found in gamma-aminobutyric acid receptor-associated protein (GABARAP)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

161017532..161024334 complement

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GenBank, FASTA, Sequence Viewer (Graphics)