U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

acap2.S rfGAP with coiled-coil, ankyrin repeat and PH domains 2 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 414474, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
acap2.S
Official Full Name
rfGAP with coiled-coil, ankyrin repeat and PH domains 2 S homeolog
Primary source
Xenbase:XB-GENE-6252841
Locus tag
XELAEV_18029659mg
See related
EnsemblRapid:ENSXLAG00005008232
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
acap2; acap3; centb2; centb5; cnt-b2; acap3.L
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See acap2.S in Genome Data Viewer
Location:
chromosome: 5S
Exon count:
24
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5S NC_054380.1 (92760198..92819807)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5S NC_030733.1 (87300770..87330145)

Chromosome 5S - NC_054380.1Genomic Context describing neighboring genes Neighboring gene 3-hydroxybutyrate dehydrogenase, type 1 A pseudogene S homeolog Neighboring gene 3-hydroxybutyrate dehydrogenase, type 1 B S homeolog Neighboring gene protein phosphatase 1 regulatory inhibitor subunit 2 S homeolog Neighboring gene uncharacterized LOC121394270 Neighboring gene xyloside xylosyltransferase 1 S homeolog Neighboring gene family with sequence similarity 43 member A S homeolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC81056

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in endosome IEA
Inferred from Electronic Annotation
more info
  
located_in endosome membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
rfGAP with coiled-coil, ankyrin repeat and PH domains 2 S homeolog
Names
ArfGAP with coiled-coil, ankyrin repeat and PH domains 2
ArfGAP with coiled-coil, ankyrin repeat and PH domains 3 L homeolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091058.1 → NP_001084527.1  rfGAP with coiled-coil, ankyrin repeat and PH domains 2 S homeolog

    See identical proteins and their annotated locations for NP_001084527.1

    Status: PROVISIONAL

    Source sequence(s)
    BC068667
    UniProtKB/TrEMBL
    Q6NUC8
    Related
    ENSXLAP00005023707.1, ENSXLAT00005024413.1
    Conserved Domains (2) summary
    cl12013
    Location:18 → 217
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
    cl17171
    Location:269 → 287
    PH-like; Pleckstrin homology-like domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    92760198..92819807
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041563972.1 → XP_041419906.1  rfGAP with coiled-coil, ankyrin repeat and PH domains 2 S homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J1KRH6
    Related
    ENSXLAP00005023803.1, ENSXLAT00005024511.1
    Conserved Domains (6) summary
    PTZ00322
    Location:636 → 707
    PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
    cd07638
    Location:18 → 217
    BAR_ACAP2; The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2
    COG0666
    Location:541 → 708
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd13250
    Location:269 → 372
    PH_ACAP; ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain
    sd00045
    Location:591 → 617
    ANK; ANK repeat [structural motif]
    cd08851
    Location:404 → 519
    ArfGap_ACAP2; ArfGAP domain of ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domains 2)

  2. XM_041563970.1 → XP_041419904.1  rfGAP with coiled-coil, ankyrin repeat and PH domains 2 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1KUK4
    Related
    ENSXLAP00005023816.1, ENSXLAT00005024524.1
    Conserved Domains (5) summary
    PTZ00322
    Location:667 → 738
    PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
    cd07638
    Location:18 → 217
    BAR_ACAP2; The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2
    cd13250
    Location:269 → 372
    PH_ACAP; ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain
    sd00045
    Location:622 → 648
    ANK; ANK repeat [structural motif]
    cd08851
    Location:404 → 519
    ArfGap_ACAP2; ArfGAP domain of ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domains 2)

  3. XM_041563971.1 → XP_041419905.1  rfGAP with coiled-coil, ankyrin repeat and PH domains 2 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A1L8G3U3, A0A974CRT1
    Related
    ENSXLAP00005023834.1, ENSXLAT00005024542.1
    Conserved Domains (5) summary
    cd07638
    Location:18 → 217
    BAR_ACAP2; The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2
    cd13250
    Location:269 → 365
    PH_ACAP; ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain
    sd00045
    Location:615 → 641
    ANK; ANK repeat [structural motif]
    cd08851
    Location:397 → 512
    ArfGap_ACAP2; ArfGAP domain of ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domains 2)
    pfam12796
    Location:615 → 709
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.