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tbc1d7.L TBC1 domain family member 7 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 414469, updated on 18-Sep-2024

Summary

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Official Symbol
tbc1d7.L
Official Full Name
TBC1 domain family member 7 L homeolog
Primary source
Xenbase:XB-GENE-865828
Locus tag
XELAEV_18031641mg
See related
EnsemblRapid:ENSXLAG00005018397
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
tbc1d7
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Genomic context

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See tbc1d7.L in Genome Data Viewer
Location:
chromosome: 6L
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (95672642..95682564)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6L NC_030734.1 (88921354..88931350)

Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene PAK1 interacting protein 1 L homeolog Neighboring gene transmembrane protein 14C L homeolog Neighboring gene male germ cell associated kinase L homeolog Neighboring gene uncharacterized LOC121394869

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC81202

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within activation of GTPase activity IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within negative regulation of TOR signaling IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
  
located_in lysosome IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in vesicle IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
TBC1 domain family member 7 L homeolog
Names
TBC1 domain family, member 7

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091053.1 → NP_001084522.1  TBC1 domain family member 7 L homeolog

    See identical proteins and their annotated locations for NP_001084522.1

    Status: PROVISIONAL

    Source sequence(s)
    BC068734
    UniProtKB/TrEMBL
    Q6NU66
    Related
    ENSXLAP00005054351.1, ENSXLAT00005055525.1
    Conserved Domains (1) summary
    cl02495
    Location:147 → 247
    RabGAP-TBC; Rab-GTPase-TBC domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    95672642..95682564
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041565391.1 → XP_041421325.1  TBC1 domain family member 7 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1KVI8
    Related
    ENSXLAP00005054358.1, ENSXLAT00005055531.1
    Conserved Domains (1) summary
    cl02495
    Location:163 → 265
    RabGAP-TBC; Rab-GTPase-TBC domain

  2. XM_041565392.1 → XP_041421326.1  TBC1 domain family member 7 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1KVJ6
    Conserved Domains (1) summary
    cl02495
    Location:136 → 238
    RabGAP-TBC; Rab-GTPase-TBC domain

  3. XM_041565393.1 → XP_041421327.1  TBC1 domain family member 7 L homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J1KVJ8, A0A974HG80
    Related
    ENSXLAP00005054366.1, ENSXLAT00005055540.1
    Conserved Domains (1) summary
    cl02495
    Location:118 → 220
    RabGAP-TBC; Rab-GTPase-TBC domain
Nucleotide Protein Strain
Heading Accession and Version

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