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RARS1 arginyl-tRNA synthetase 1 [ Sus scrofa (pig) ]

Gene ID: 414410, updated on 17-Aug-2024

Summary

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Official Symbol
RARS1provided by VGNC
Official Full Name
arginyl-tRNA synthetase 1provided by VGNC
Primary source
VGNC:VGNC:92099
See related
Ensembl:ENSSSCG00000017015
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
RARS; ARGRS
Expression
Ubiquitous expression in ovary (RPKM 31.7), spleen (RPKM 25.3) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See RARS1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
15
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 16 NC_010458.4 (55373739..55412076, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 16 NC_010458.3 (59959187..59972120, complement)

Chromosome 16 - NC_010458.4Genomic Context describing neighboring genes Neighboring gene rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 Neighboring gene microRNA mir-103-1 Neighboring gene uncharacterized LOC110257231 Neighboring gene pantothenate kinase 3 Neighboring gene WW and C2 domain containing 1 Neighboring gene teneurin transmembrane protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables arginine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in arginyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
arginine--tRNA ligase, cytoplasmic
NP_001231189.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001244260.1 → NP_001231189.1  arginine--tRNA ligase, cytoplasmic

    Status: PROVISIONAL

    Source sequence(s)
    AK343651
    UniProtKB/TrEMBL
    A0A8D1FFG0, A0A8D1RIW8, F1RR89
    Related
    ENSSSCP00000018027.3, ENSSSCT00000018527.5
    Conserved Domains (4) summary
    cd00671
    Location:193 → 457
    ArgRS_core; catalytic core domain of arginyl-tRNA synthetases
    smart01016
    Location:80 → 166
    Arg_tRNA_synt_N; Arginyl tRNA synthetase N terminal dom
    PLN02286
    Location:80 → 660
    PLN02286; arginine-tRNA ligase
    cl12020
    Location:498 → 660
    Anticodon_Ia_like; Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010458.4 Reference Sscrofa11.1 Primary Assembly

    Range
    55373739..55412076 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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