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RPS3A ribosomal protein S3A [ Sus scrofa (pig) ]

Gene ID: 414390, updated on 17-Aug-2024

Summary

Official Symbol
RPS3Aprovided by VGNC
Official Full Name
ribosomal protein S3Aprovided by VGNC
Primary source
VGNC:VGNC:98958
See related
Ensembl:ENSSSCG00000009019
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Annotation information
Annotation category: partial on reference assembly
Expression
Ubiquitous expression in spleen (RPKM 1446.0), ovary (RPKM 1037.1) and 8 other tissues See more
Orthologs
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Genomic context

See RPS3A in Genome Data Viewer
Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 8 NC_010450.4 (77889616..77893740, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 8 NC_010450.3 (82594439..82598565, complement)

Chromosome 8 - NC_010450.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102161916 Neighboring gene SH3 domain containing 19 Neighboring gene serine protease 48 Neighboring gene uncharacterized LOC102163359 Neighboring gene ice-structuring protein 4-like Neighboring gene LPS responsive beige-like anchor protein

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
small ribosomal subunit protein eS1
Names
40S ribosomal protein S3a
NP_001131091.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001137619.1NP_001131091.1  small ribosomal subunit protein eS1

    See identical proteins and their annotated locations for NP_001131091.1

    Status: PROVISIONAL

    Source sequence(s)
    FJ268645
    UniProtKB/TrEMBL
    A0A8D0QBG4, A0A8D1HAP1, B6V8C8
    Related
    ENSSSCP00000009623.2, ENSSSCT00000009878.5
    Conserved Domains (1) summary
    pfam01015
    Location:21221
    Ribosomal_S3Ae; Ribosomal S3Ae family

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010450.4 Reference Sscrofa11.1 Primary Assembly

    Range
    77889616..77893740 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)