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CG6813 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 41396, updated on 28-Oct-2024

Summary

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Official Symbol
CG6813provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0037923
Locus tag
Dmel_CG6813
See related
AllianceGenome:FB:FBgn0037923
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG31372; Dmel\CG6813
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Is expressed in organism. [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
all
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Genomic context

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See CG6813 in Genome Data Viewer
Location:
86E13-86E13; 3-51 cM
Exon count:
4
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (11625051..11626638, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (7450773..7452360, complement)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ZAD and Architectural Function 1 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Jupiter, a new Drosophila protein associated with microtubules. Karpova N, et al. Cell Motil Cytoskeleton, 2006 May. PMID 16518797
  2. Twenty-seven ZAD-ZNF genes of Drosophila melanogaster are orthologous to the embryo polarity determining mosquito gene cucoid. Li M, et al. PLoS One, 2023. PMID 36595500, Free PMC Article
  3. ZAD-Domain Is Essential for Nuclear Localization of Insulator Proteins in Drosophila melanogaster. Zolotarev NA, et al. Acta Naturae, 2016 Jul-Sep. PMID 27795848, Free PMC Article
  4. Innovation of heterochromatin functions drives rapid evolution of essential ZAD-ZNF genes in Drosophila. Kasinathan B, et al. Elife, 2020 Nov 10. PMID 33169670, Free PMC Article
  5. The genetic basis for variation in resistance to infection in the Drosophila melanogaster genetic reference panel. Wang JB, et al. PLoS Pathog, 2017 Mar. PMID 28257468, Free PMC Article

See all (27) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables transcription cis-regulatory region binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of DNA-templated transcription ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG6813-PB
CG6813-PC
CG6813-PD

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    11625051..11626638 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001300361.1 → NP_001287290.1  uncharacterized protein Dmel_CG6813, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001287290.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B3DMZ5, Q9VGL1
    Conserved Domains (3) summary
    sd00017
    Location:144 → 164
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam07776
    Location:6 → 76
    zf-AD; Zinc-finger associated domain (zf-AD)
    pfam13465
    Location:186 → 211
    zf-H2C2_2; Zinc-finger double domain

  2. NM_169413.2 → NP_731605.2  uncharacterized protein Dmel_CG6813, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_731605.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    B3DMZ5, Q9VGL1
    Conserved Domains (3) summary
    sd00017
    Location:144 → 164
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam07776
    Location:6 → 76
    zf-AD; Zinc-finger associated domain (zf-AD)
    pfam13465
    Location:186 → 211
    zf-H2C2_2; Zinc-finger double domain

  3. NM_001170119.1 → NP_001163590.1  uncharacterized protein Dmel_CG6813, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001163590.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    E1JII8
    Conserved Domains (4) summary
    COG5112
    Location:256 → 294
    UFD2; U1-like Zn-finger-containing protein [General function prediction only]
    sd00017
    Location:144 → 164
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam07776
    Location:6 → 76
    zf-AD; Zinc-finger associated domain (zf-AD)
    pfam13465
    Location:186 → 211
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
E1JII8 E1JII8
Q9VGL1 Q9VGL1

Gene LinkOut

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