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CG3909 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 41226, updated on 2-Nov-2024

Summary

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Official Symbol
CG3909provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0027524
Locus tag
Dmel_CG3909
See related
AllianceGenome:FB:FBgn0027524
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
BcDNA:LD21537; CG3039; Dmel\CG3909; dSki8; ski8; Ski8
Summary
Predicted to be part of Cdc73/Paf1 complex. Is expressed in adult head and organism. Orthologous to human SKIC8 (SKI8 subunit of superkiller complex). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See CG3909 in Genome Data Viewer
Location:
85F7-85F7; 3-49 cM
Exon count:
5
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (10043270..10044606)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (5868992..5870328)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Serpin 85F Neighboring gene uncharacterized protein Neighboring gene Molecule interacting with CasL Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene mitochondrial transcription factor B2 Neighboring gene uncharacterized protein Neighboring gene ohgata Neighboring gene fancl

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A functional involvement of ABCE1, eukaryotic ribosome recycling factor, in nonstop mRNA decay in Drosophila melanogaster cells. Kashima I, et al. Biochimie, 2014 Nov. PMID 25128630
  2. HemK2 functions for sufficient protein synthesis and RNA stability through eRF1 methylation during Drosophila oogenesis. Xu F, et al. Development, 2024 Jul 15. PMID 38881530
  3. A conserved virus-induced cytoplasmic TRAMP-like complex recruits the exosome to target viral RNA for degradation. Molleston JM, et al. Genes Dev, 2016 Jul 15. PMID 27474443, Free PMC Article
  4. RNA kinase CLP1/Cbc regulates meiosis initiation in spermatogenesis. Wu J, et al. Hum Mol Genet, 2021 Aug 12. PMID 33864361, Free PMC Article
  5. Drosophila MICAL regulates myofilament organization and synaptic structure. Beuchle D, et al. Mech Dev, 2007 May. PMID 17350233

See all (45) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Component Evidence Code Pubs
part_of Cdc73/Paf1 complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG3909-PA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    10043270..10044606
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_141712.4 → NP_649969.1  uncharacterized protein Dmel_CG3909 [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_649969.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9XZ19
    Related
    FBpp0081650
    Conserved Domains (3) summary
    COG2319
    Location:54 → 326
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:52 → 323
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:89 → 127
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9XZ19 Q9XZ19

Gene LinkOut

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