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ClpX Caseinolytic protease chaperone subunit [ Apis mellifera (honey bee) ]

Gene ID: 411141, updated on 2-Oct-2024

Summary

Gene symbol
ClpX
Gene description
Caseinolytic protease chaperone subunit
Gene type
protein coding
RefSeq status
MODEL
Organism
Apis mellifera
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis
Also known as
GB42354
Orthologs
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Genomic context

See ClpX in Genome Data Viewer
Location:
chromosome: LG6
Exon count:
7
Annotation release Status Assembly LG Location
104 current Amel_HAv3.1 (GCF_003254395.2) LG6 NC_037643.1 (15411097..15415250)
103 previous assembly Amel_4.5 (GCF_000002195.4) LG6 NC_007075.3 (16020942..16025056, complement)

Linkage Group LG6 - NC_037643.1Genomic Context describing neighboring genes Neighboring gene elongation factor-like GTPase 1 Neighboring gene protein giant-lens Neighboring gene protein bud22 Neighboring gene solute carrier family 25 member 46 Neighboring gene asparagine--tRNA ligase, cytoplasmic

Genomic regions, transcripts, and products

General gene information

Markers

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in protein catabolic process IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apis mellifera Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Amel_HAv3.1 Primary Assembly

Genomic

  1. NC_037643.1 Reference Amel_HAv3.1 Primary Assembly

    Range
    15411097..15415250
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006570674.3XP_006570737.1  ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X1

    See identical proteins and their annotated locations for XP_006570737.1

    UniProtKB/TrEMBL
    A0A7M7H4K9, A0A7M7LPV9, A0A8B6ZA10, A0A8B9B5F4
    Conserved Domains (2) summary
    PRK05342
    Location:140571
    clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
    cl02609
    Location:72102
    Zn-ribbon; C-terminal zinc ribbon domain of RNA polymerase intrinsic transcript cleavage subunit
  2. XM_006570676.3XP_006570739.1  ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A7M7GZH4, A0A8B6Z8I5
    Conserved Domains (4) summary
    smart01086
    Location:471554
    ClpB_D2-small; C-terminal, D2-small domain, of ClpB protein
    TIGR00382
    Location:69565
    clpX; endopeptidase Clp ATP-binding regulatory subunit (clpX)
    pfam07724
    Location:248464
    AAA_2; AAA domain (Cdc48 subfamily)
    cl02609
    Location:72102
    Zn-ribbon; C-terminal zinc ribbon domain of RNA polymerase intrinsic transcript cleavage subunit
  3. XM_006570675.3XP_006570738.1  ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X1

    See identical proteins and their annotated locations for XP_006570738.1

    UniProtKB/TrEMBL
    A0A7M7H4K9, A0A7M7LPV9, A0A8B6ZA10, A0A8B9B5F4
    Conserved Domains (2) summary
    PRK05342
    Location:140571
    clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
    cl02609
    Location:72102
    Zn-ribbon; C-terminal zinc ribbon domain of RNA polymerase intrinsic transcript cleavage subunit
  4. XM_394615.7XP_394615.2  ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X1

    See identical proteins and their annotated locations for XP_394615.2

    UniProtKB/TrEMBL
    A0A7M7H4K9, A0A7M7LPV9, A0A8B6ZA10, A0A8B9B5F4
    Conserved Domains (2) summary
    PRK05342
    Location:140571
    clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
    cl02609
    Location:72102
    Zn-ribbon; C-terminal zinc ribbon domain of RNA polymerase intrinsic transcript cleavage subunit
  5. XM_006570677.3XP_006570740.1  ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X3

    UniProtKB/TrEMBL
    A0A7M7GZE8, A0A8B6Z8I3
    Conserved Domains (2) summary
    pfam07724
    Location:252468
    AAA_2; AAA domain (Cdc48 subfamily)
    cl02609
    Location:72102
    Zn-ribbon; C-terminal zinc ribbon domain of RNA polymerase intrinsic transcript cleavage subunit