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VhaSFD V-type proton ATPase subunit VhaSFD [ Apis mellifera (honey bee) ]

Gene ID: 409055, updated on 2-Oct-2024

Summary

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Gene symbol
VhaSFD
Gene description
V-type proton ATPase subunit VhaSFD
Gene type
protein coding
RefSeq status
MODEL
Organism
Apis mellifera
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis
Also known as
GB45415
Orthologs
fruit fly all
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Genomic context

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See VhaSFD in Genome Data Viewer
Location:
chromosome: LG6
Exon count:
10
Annotation release Status Assembly LG Location
104 current Amel_HAv3.1 (GCF_003254395.2) LG6 NC_037643.1 (16628971..16633514, complement)
103 previous assembly Amel_4.5 (GCF_000002195.4) LG6 NC_007075.3 (16579056..16583598)

Linkage Group LG6 - NC_037643.1Genomic Context describing neighboring genes Neighboring gene CD109 antigen Neighboring gene HAUS augmin-like complex subunit 3 Neighboring gene RNA polymerase I subunit Rpl135 Neighboring gene nuclear hormone receptor FTZ-F1 beta Neighboring gene uncharacterized LOC102656896 Neighboring gene GTPase-activating Rap/Ran-GAP domain-like protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential expression of endogenous plant cell wall degrading enzyme genes in the stick insect (Phasmatodea) midgut. Shelomi M, et al. BMC Genomics, 2014 Oct 21. PMID 25331961, Free PMC Article
  2. Insights into social insects from the genome of the honeybee Apis mellifera. Honeybee Genome Sequencing Consortium. Nature, 2006 Oct 26. PMID 17073008, Free PMC Article
  3. ProtoBee: hierarchical classification and annotation of the honey bee proteome. Kaplan N, et al. Genome Res, 2006 Nov. PMID 17065614, Free PMC Article
  4. Finding the missing honey bee genes: lessons learned from a genome upgrade. Elsik CG, et al. BMC Genomics, 2014 Jan 30. PMID 24479613, Free PMC Article
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables proton-transporting ATPase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of vacuolar proton-transporting V-type ATPase, V1 domain IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
V-type proton ATPase subunit H
Names
vacuolar H[+]-ATPase SFD subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apis mellifera Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Amel_HAv3.1 Primary Assembly

Genomic

  1. NC_037643.1 Reference Amel_HAv3.1 Primary Assembly

    Range
    16628971..16633514 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003251628.3 → XP_003251676.1  V-type proton ATPase subunit H isoform X1

    UniProtKB/TrEMBL
    A0A7M7GF80, A0A8B6XYD9
    Conserved Domains (1) summary
    cd00256
    Location:26 → 487
    VATPase_H; regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is ...

  2. XM_006570891.1 → XP_006570954.1  V-type proton ATPase subunit H isoform X3

    UniProtKB/TrEMBL
    A0A7M7H4V8, A0A8B6ZD15
    Conserved Domains (1) summary
    cd00256
    Location:2 → 453
    VATPase_H; VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The ...

  3. XM_003251627.3 → XP_003251675.1  V-type proton ATPase subunit H isoform X2

    See identical proteins and their annotated locations for XP_003251675.1

    UniProtKB/TrEMBL
    A0A7M7LKA8, A0A8B6XW94
    Conserved Domains (1) summary
    cd00256
    Location:26 → 455
    VATPase_H; VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The ...
Nucleotide Protein Strain
Heading Accession and Version

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