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thrap3b thyroid hormone receptor associated protein 3b [ Danio rerio (zebrafish) ]

Gene ID: 407984, updated on 2-Nov-2024

Summary

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Official Symbol
thrap3bprovided by ZNC
Official Full Name
thyroid hormone receptor associated protein 3bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040516-9
See related
Ensembl:ENSDARG00000098228 AllianceGenome:ZFIN:ZDB-GENE-040516-9
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:85716
Summary
Predicted to enable DNA binding activity and transcription coregulator activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be part of mediator complex. Orthologous to human THRAP3 (thyroid hormone receptor associated protein 3). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See thrap3b in Genome Data Viewer
Location:
chromosome: 19
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (3865182..3887220, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (3934234..3947781, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene organic solute carrier partner 1a Neighboring gene LSM10, U7 small nuclear RNA associated Neighboring gene eva-1 homolog Bb (C. elegans) Neighboring gene si:ch73-281i18.3 Neighboring gene si:ch73-281i18.4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables transcription coregulator activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of mediator complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
thyroid hormone receptor-associated protein 3b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_214815.1 → NP_999980.1  thyroid hormone receptor-associated protein 3b

    See identical proteins and their annotated locations for NP_999980.1

    Status: PROVISIONAL

    Source sequence(s)
    BC070004
    UniProtKB/TrEMBL
    Q6NSP0
    Related
    ENSDARP00000141866.2, ENSDART00000168377.3
    Conserved Domains (1) summary
    pfam15440
    Location:118 → 651
    THRAP3_BCLAF1; THRAP3/BCLAF1 family

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    3865182..3887220 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068215112.1 → XP_068071213.1  thyroid hormone receptor-associated protein 3b isoform X3

  2. XM_068215111.1 → XP_068071212.1  thyroid hormone receptor-associated protein 3b isoform X1

  3. XM_021468043.2 → XP_021323718.1  thyroid hormone receptor-associated protein 3b isoform X2

    UniProtKB/TrEMBL
    A0A0R4IWW7, A0A8M9PAX1
    Conserved Domains (1) summary
    pfam15440
    Location:183 → 651
    THRAP3_BCLAF1; THRAP3/BCLAF1 family

  4. XM_005173742.5 → XP_005173799.1  thyroid hormone receptor-associated protein 3b isoform X4

    UniProtKB/TrEMBL
    A0A8M2BL33
    Conserved Domains (1) summary
    pfam15440
    Location:118 → 622
    THRAP3_BCLAF1; THRAP3/BCLAF1 family
Nucleotide Protein Strain
Heading Accession and Version

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