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kpna6.S karyopherin alpha 6 (importin alpha 7) S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 407836, updated on 18-Sep-2024

Summary

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Official Symbol
kpna6.S
Official Full Name
karyopherin alpha 6 (importin alpha 7) S homeolog
Primary source
Xenbase:XB-GENE-946497
Locus tag
XELAEV_18015219mg
See related
EnsemblRapid:ENSXLAG00005004614
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
kpna6
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Genomic context

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See kpna6.S in Genome Data Viewer
Location:
chromosome: 2S
Exon count:
15
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (78050471..78063462)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (70810729..70820923)

Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108709581 Neighboring gene transmembrane protein 39B S homeolog Neighboring gene taxilin alpha S homeolog Neighboring gene protein tyrosine phosphatase type IVA, member 2 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Signals and receptors for the nuclear transport of TFIIIA in Xenopus oocytes. Wischnewski J, et al. Eur J Cell Biol, 2004 Mar. PMID 15146977
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables nuclear import signal receptor activity IEA
Inferred from Electronic Annotation
more info
  
enables nuclear localization sequence binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within NLS-bearing protein import into nucleus IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein import into nucleus IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
importin alpha 5.2 protein
Names
imp alpha 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091013.2 → NP_001084482.2  importin alpha 5.2 protein

    Status: VALIDATED

    Source sequence(s)
    BC072048, DC114981, JAGEVR010000050
    UniProtKB/TrEMBL
    A0A974HVX4, Q6IP69
    Related
    ENSXLAP00005013855.1, ENSXLAT00005014037.1
    Conserved Domains (2) summary
    sd00043
    Location:255 → 280
    ARM; armadillo repeat [structural motif]
    cl25709
    Location:36 → 514
    Arm_3; Atypical Arm repeat

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    78050471..78063462
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041583056.1 → XP_041438990.1  importin alpha 5.2 protein isoform X1

    UniProtKB/TrEMBL
    A0A8J1MD28, A0A974HVX4
    Related
    ENSXLAP00005013837.1, ENSXLAT00005014019.1
    Conserved Domains (2) summary
    COG5064
    Location:42 → 520
    SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
    sd00043
    Location:261 → 286
    ARM; armadillo repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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