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Tsbp1 testis expressed basic protein 1 [ Mus musculus (house mouse) ]

Gene ID: 407788, updated on 17-Aug-2024

Summary

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Official Symbol
Tsbp1provided by MGI
Official Full Name
testis expressed basic protein 1provided by MGI
Primary source
MGI:MGI:3039565
See related
Ensembl:ENSMUSG00000057246 AllianceGenome:MGI:3039565
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
NG8; TSBP; Tesb; Tesbp
Summary
Is expressed in nervous system and sensory organ. Orthologous to human TSBP1 (testis expressed basic protein 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 119.4) See more
Orthologs
human all
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Genomic context

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Location:
17 18.0 cM; 17 B1
Exon count:
36
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (34617749..34679708)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (34398767..34460734)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene butyrophilin-like 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:34535059-34535242 Neighboring gene STARR-positive B cell enhancer ABC_E4211 Neighboring gene non-histone chromosomal protein HMG-14-like Neighboring gene butyrophilin-like 4 Neighboring gene butyrophilin-like 5, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. BTL-II: a polymorphic locus with homology to the butyrophilin gene family, located at the border of the major histocompatibility complex class II and class III regions in human and mouse. Stammers M, et al. Immunogenetics, 2000 Apr. PMID 10803852
  2. Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Miyata H, et al. Proc Natl Acad Sci U S A, 2016 Jul 12. PMID 27357688, Free PMC Article
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
testis-expressed basic protein 1
Names
testis specific basic protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001177.2 → NP_001001177.2  testis-expressed basic protein 1 isoform 1

    See identical proteins and their annotated locations for NP_001001177.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AK077077, BY454825, CR974457, CT009767
    Consensus CDS
    CCDS37586.1
    UniProtKB/TrEMBL
    A2CG24, Q8BHP1
    Related
    ENSMUSP00000077685.6, ENSMUST00000078615.12

  2. NM_001163855.1 → NP_001157327.1  testis-expressed basic protein 1 isoform 2

    See identical proteins and their annotated locations for NP_001157327.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and in the central and 3' coding regions, compared to variant 1. The resulting isoform (2) has a distinct C-terminus and is shorter than isoform 1.
    Source sequence(s)
    BC051142, BY454825
    Consensus CDS
    CCDS50076.1
    UniProtKB/TrEMBL
    Q80XD0
    Related
    ENSMUSP00000109812.2, ENSMUST00000114175.8

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    34617749..34679708
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011246526.4 → XP_011244828.1  testis-expressed basic protein 1 isoform X31

    See identical proteins and their annotated locations for XP_011244828.1

  2. XM_017317556.3 → XP_017173045.1  testis-expressed basic protein 1 isoform X5

  3. XM_017317553.3 → XP_017173042.1  testis-expressed basic protein 1 isoform X1

  4. XM_006524551.5 → XP_006524614.1  testis-expressed basic protein 1 isoform X4

    See identical proteins and their annotated locations for XP_006524614.1

  5. XM_006524550.5 → XP_006524613.1  testis-expressed basic protein 1 isoform X3

    See identical proteins and their annotated locations for XP_006524613.1

  6. XM_006524554.5 → XP_006524617.1  testis-expressed basic protein 1 isoform X7

    See identical proteins and their annotated locations for XP_006524617.1

  7. XM_006524556.5 → XP_006524619.1  testis-expressed basic protein 1 isoform X9

    See identical proteins and their annotated locations for XP_006524619.1

    UniProtKB/TrEMBL
    Q8BHP1

  8. XM_006524558.5 → XP_006524621.1  testis-expressed basic protein 1 isoform X12

    See identical proteins and their annotated locations for XP_006524621.1

    UniProtKB/TrEMBL
    Q8BHP1

  9. XM_006524555.5 → XP_006524618.1  testis-expressed basic protein 1 isoform X8

    See identical proteins and their annotated locations for XP_006524618.1

    UniProtKB/TrEMBL
    Q8BHP1

  10. XM_017317557.3 → XP_017173046.1  testis-expressed basic protein 1 isoform X10

    UniProtKB/TrEMBL
    Q8BHP1

  11. XM_017317558.3 → XP_017173047.1  testis-expressed basic protein 1 isoform X14

    UniProtKB/TrEMBL
    Q8BHP1

  12. XM_006524564.5 → XP_006524627.1  testis-expressed basic protein 1 isoform X18

    See identical proteins and their annotated locations for XP_006524627.1

    UniProtKB/TrEMBL
    Q8BHP1

  13. XM_006524567.5 → XP_006524630.1  testis-expressed basic protein 1 isoform X21

    See identical proteins and their annotated locations for XP_006524630.1

    UniProtKB/TrEMBL
    Q8BHP1

  14. XM_006524569.5 → XP_006524632.1  testis-expressed basic protein 1 isoform X23

    See identical proteins and their annotated locations for XP_006524632.1

    UniProtKB/TrEMBL
    Q8BHP1

  15. XM_006524553.5 → XP_006524616.1  testis-expressed basic protein 1 isoform X6

    See identical proteins and their annotated locations for XP_006524616.1

    UniProtKB/TrEMBL
    Q8BHP1

  16. XM_036160675.1 → XP_036016568.1  testis-expressed basic protein 1 isoform X1

  17. XM_036160676.1 → XP_036016569.1  testis-expressed basic protein 1 isoform X1

  18. XM_006524559.5 → XP_006524622.1  testis-expressed basic protein 1 isoform X13

    See identical proteins and their annotated locations for XP_006524622.1

    UniProtKB/TrEMBL
    Q8BHP1

  19. XM_006524563.5 → XP_006524626.1  testis-expressed basic protein 1 isoform X17

    See identical proteins and their annotated locations for XP_006524626.1

    UniProtKB/TrEMBL
    Q8BHP1

  20. XM_006524561.5 → XP_006524624.1  testis-expressed basic protein 1 isoform X15

    See identical proteins and their annotated locations for XP_006524624.1

    UniProtKB/TrEMBL
    Q8BHP1

  21. XM_006524562.5 → XP_006524625.1  testis-expressed basic protein 1 isoform X16

    See identical proteins and their annotated locations for XP_006524625.1

    UniProtKB/TrEMBL
    Q8BHP1

  22. XM_006524565.5 → XP_006524628.1  testis-expressed basic protein 1 isoform X19

    See identical proteins and their annotated locations for XP_006524628.1

    UniProtKB/TrEMBL
    Q8BHP1

  23. XM_006524568.5 → XP_006524631.1  testis-expressed basic protein 1 isoform X22

    See identical proteins and their annotated locations for XP_006524631.1

    UniProtKB/TrEMBL
    Q8BHP1

  24. XM_006524566.5 → XP_006524629.1  testis-expressed basic protein 1 isoform X20

    See identical proteins and their annotated locations for XP_006524629.1

    UniProtKB/TrEMBL
    Q8BHP1

  25. XM_006524547.5 → XP_006524610.1  testis-expressed basic protein 1 isoform X2

    See identical proteins and their annotated locations for XP_006524610.1

  26. XM_036160677.1 → XP_036016570.1  testis-expressed basic protein 1 isoform X11

    UniProtKB/TrEMBL
    Q8BHP1

  27. XM_006524548.5 → XP_006524611.1  testis-expressed basic protein 1 isoform X2

    See identical proteins and their annotated locations for XP_006524611.1

  28. XM_006524549.5 → XP_006524612.1  testis-expressed basic protein 1 isoform X2

    See identical proteins and their annotated locations for XP_006524612.1

  29. XM_017317560.3 → XP_017173049.1  testis-expressed basic protein 1 isoform X25

  30. XM_017317561.3 → XP_017173050.1  testis-expressed basic protein 1 isoform X26

  31. XM_017317559.3 → XP_017173048.1  testis-expressed basic protein 1 isoform X24

    UniProtKB/TrEMBL
    Q8BHP1

  32. XM_017317562.3 → XP_017173051.1  testis-expressed basic protein 1 isoform X28

    UniProtKB/TrEMBL
    Q8BHP1

  33. XM_006524574.4 → XP_006524637.1  testis-expressed basic protein 1 isoform X27

    See identical proteins and their annotated locations for XP_006524637.1

    UniProtKB/TrEMBL
    Q3V0M8, Q8BHP1

  34. XM_017317555.2 → XP_017173044.1  testis-expressed basic protein 1 isoform X1

  35. XM_030249888.2 → XP_030105748.1  testis-expressed basic protein 1 isoform X2

  36. XM_030249889.1 → XP_030105749.1  testis-expressed basic protein 1 isoform X2

  37. XM_017317563.1 → XP_017173052.1  testis-expressed basic protein 1 isoform X29

  38. XM_006524577.3 → XP_006524640.1  testis-expressed basic protein 1 isoform X30

    See identical proteins and their annotated locations for XP_006524640.1

RNA

  1. XR_876520.4 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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