U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

cryz crystallin, zeta (quinone reductase) [ Danio rerio (zebrafish) ]

Gene ID: 407640, updated on 12-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
cryzprovided by ZNC
Official Full Name
crystallin, zeta (quinone reductase)provided by ZNC
Primary source
ZFIN:ZDB-GENE-050306-24
See related
Ensembl:ENSDARG00000016074 AllianceGenome:ZFIN:ZDB-GENE-050306-24
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fq09a05; zgc:110776
Summary
Predicted to enable NADPH binding activity; NADPH:quinone reductase activity; and mRNA 3'-UTR binding activity. Predicted to be active in cytosol. Orthologous to human CRYZ (crystallin zeta). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See cryz in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (11103239..11119399, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (11319640..11335800, complement)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 151 member A Neighboring gene leucine rich repeat containing 53 Neighboring gene tRNA-yW synthesizing protein 3 homolog (S. cerevisiae) Neighboring gene solute carrier family 44 member 5a Neighboring gene LIM homeobox 8a Neighboring gene uncharacterized LOC108179505

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Zebrafish model of human Zellweger syndrome reveals organ-specific accumulation of distinct fatty acid species and widespread gene expression changes. Takashima S, et al. Mol Genet Metab, 2021 Jul. PMID 34016526
  2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables NADPH binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables NADPH:quinone reductase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables NADPH:quinone reductase activity IEA
Inferred from Electronic Annotation
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables mRNA 3'-UTR binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
quinone oxidoreductase
NP_001093446.1
XP_009296152.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001099976.1 → NP_001093446.1  quinone oxidoreductase

    See identical proteins and their annotated locations for NP_001093446.1

    Status: PROVISIONAL

    Source sequence(s)
    BX927315
    UniProtKB/TrEMBL
    A0A8M1NDY4, A5PN39
    Related
    ENSDARP00000118753.1, ENSDART00000131836.4
    Conserved Domains (2) summary
    cd08253
    Location:7 → 328
    zeta_crystallin; Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)
    COG0604
    Location:7 → 328
    Qor; NADPH:quinone reductase or related Zn-dependent oxidoreductase [Energy production and conversion, General function prediction only]

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    11103239..11119399 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009297877.4 → XP_009296152.1  quinone oxidoreductase isoform X1

    See identical proteins and their annotated locations for XP_009296152.1

    UniProtKB/TrEMBL
    A0A8M1NDY4, A5PN39
    Related
    ENSDARP00000147750.1, ENSDART00000184793.1
    Conserved Domains (2) summary
    cd08253
    Location:7 → 328
    zeta_crystallin; Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)
    COG0604
    Location:7 → 328
    Qor; NADPH:quinone reductase or related Zn-dependent oxidoreductase [Energy production and conversion, General function prediction only]
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.