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EX895_000486 hypothetical protein [ Sporisorium graminicola ]

Gene ID: 40723381, updated on 21-Dec-2023

Summary

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Gene symbol
EX895_000486
Gene description
hypothetical protein
Locus tag
EX895_000486
Gene type
protein coding
RNA name
uncharacterized protein
RefSeq status
PROVISIONAL
Organism
Sporisorium graminicola (strain: CBS 10092, nat-host: Phleum pratense, culture-collection: CBS:10092, type-material: type material of Sporisorium graminicola)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Sporisorium
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Genomic context

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See EX895_000486 in Genome Data Viewer
Location:
chromosome: SGRAM_1
Exon count:
3
Sequence:
Chromosome: SGRAM_1; NC_043719.1 (1274334..1277625, complement)

Chromosome SGRAM_1 - NC_043719.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_043719.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_043719.1 Reference assembly

    Range
    1274334..1277625 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029881087.1 → XP_029742473.1  hypothetical protein EX895_000486 [Sporisorium graminicola]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A4U7L3K7
    Conserved Domains (2) summary
    pfam02469
    Location:649 → 782
    Fasciclin; Fasciclin domain
    cl02663
    Location:477 → 635
    Fasciclin; Fasciclin domain
Nucleotide Protein
Heading Accession and Version

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