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SLCO3A1 solute carrier organic anion transporter family member 3A1 [ Bos taurus (domestic cattle) ]

Gene ID: 407132, updated on 4-Oct-2024

Summary

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Official Symbol
SLCO3A1provided by VGNC
Official Full Name
solute carrier organic anion transporter family member 3A1provided by VGNC
Primary source
VGNC:VGNC:34953
See related
Ensembl:ENSBTAG00000001652
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See SLCO3A1 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 21 NC_037348.1 (14841868..15219512, complement)

Chromosome 21 - NC_037348.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132343331 Neighboring gene uncharacterized LOC132343332 Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 Neighboring gene uncharacterized LOC132343333 Neighboring gene synaptic vesicle glycoprotein 2B Neighboring gene uncharacterized LOC112443234 Neighboring gene uncharacterized LOC132343334

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037348.1 Chromosome 21 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sodium-independent organic anion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in prostaglandin transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sodium-independent organic anion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
solute carrier organic anion transporter family member 3A1
Names
OATP-D
organic anion transporting polypeptide 3a1
organic anion-transporting polypeptide D

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001134.1 → NP_001001134.1  solute carrier organic anion transporter family member 3A1

    See identical proteins and their annotated locations for NP_001001134.1

    Status: PROVISIONAL

    Source sequence(s)
    AJ508719
    UniProtKB/Swiss-Prot
    A4FV49, Q8HYW2
    UniProtKB/TrEMBL
    A0AAF6YIG8
    Related
    ENSBTAP00000002169.5, ENSBTAT00000002169.6
    Conserved Domains (1) summary
    cd17402
    Location:39 → 563
    MFS_SLCO3_OATP3; Solute carrier organic anion transporter 3 family of the Major Facilitator Superfamily of transporters

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037348.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    14841868..15219512 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005221711.5 → XP_005221768.1  solute carrier organic anion transporter family member 3A1 isoform X1

    See identical proteins and their annotated locations for XP_005221768.1

    UniProtKB/TrEMBL
    A0AAA9U0W7
    Related
    ENSBTAP00000103626.1, ENSBTAT00000101389.1
    Conserved Domains (1) summary
    pfam03137
    Location:41 → 622
    OATP; Organic Anion Transporter Polypeptide (OATP) family
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8HYW2.1 GenPept UniProtKB/Swiss-Prot:Q8HYW2

Gene LinkOut

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