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MIR9-3 microRNA 9-3 [ Homo sapiens (human) ]

Gene ID: 407051, updated on 31-Mar-2024

Summary

Official Symbol
MIR9-3provided by HGNC
Official Full Name
microRNA 9-3provided by HGNC
Primary source
HGNC:HGNC:31646
See related
Ensembl:ENSG00000284329 MIM:611188; miRBase:MI0000468; AllianceGenome:HGNC:31646
Gene type
ncRNA
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MIRN9-3; mir-9-3; miRNA9-3; hsa-mir-9-3
Summary
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
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Genomic context

Location:
15q26.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (89368017..89368106)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (87124074..87124163)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (89911248..89911337)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10047 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10048 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10049 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:89880071-89880240 Neighboring gene tRNA-Arg (anticodon TCG) 1-1 Neighboring gene POLG divergent transcript Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr15:89891730-89892929 Neighboring gene uncharacterized LOC124903549 Neighboring gene Sharpr-MPRA regulatory region 10069 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6794 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6795 Neighboring gene MIR9-3 host gene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:89910855-89911468 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:89913278-89914160 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:89914161-89915042 Neighboring gene uncharacterized LOC107984777 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10051 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:89943355-89943880 Neighboring gene uncharacterized LOC105371031 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:89943881-89944405 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10052 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:89950909-89951506 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:89959457-89959966 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:89959967-89960475

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in miRNA-mediated post-transcriptional gene silencing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of RISC complex IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_029692.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AC133637
    Related
    ENST00000385084.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    89368017..89368106
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    87124074..87124163
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)