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ipo9 importin 9 [ Danio rerio (zebrafish) ]

Gene ID: 406860, updated on 17-Aug-2024

Summary

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Official Symbol
ipo9provided by ZNC
Official Full Name
importin 9provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2953
See related
Ensembl:ENSDARG00000016753 AllianceGenome:ZFIN:ZDB-GENE-040426-2953
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:66429; wu:fc23d12
Summary
Predicted to be involved in protein import into nucleus. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in cytosol and nuclear envelope. Is expressed in several structures, including blood; immature eye; nervous system; ventral mesenchyme; and ventral mesoderm. Orthologous to human IPO9 (importin 9). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
24
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (24851652..24876621)
105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (24614018..24639002)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene RAB interacting factor Neighboring gene lysine demethylase 5Ba Neighboring gene shisa family member 4 Neighboring gene leiomodin 1b (smooth muscle)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. The orphan G protein-coupled receptor 25 (GPR25) is activated by Apelin and Apela in non-mammalian vertebrates. Zhang J, et al. Biochem Biophys Res Commun, 2018 Jun 22. PMID 29727602
  2. Transcriptional enhancers in protein-coding exons of vertebrate developmental genes. Ritter DI, et al. PLoS One, 2012. PMID 22567096, Free PMC Article
  3. Zebrafish midbrain slow-amplifying progenitors exhibit high levels of transcripts for nucleotide and ribosome biogenesis. Recher G, et al. Development, 2013 Dec. PMID 24198278
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
involved_in protein import into nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nuclear envelope IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
importin-9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213539.1 → NP_998704.1  importin-9

    Status: PROVISIONAL

    Source sequence(s)
    BC059203
    UniProtKB/TrEMBL
    Q6PCR2
    Related
    ENSDARP00000137497.1, ENSDART00000167659.2
    Conserved Domains (3) summary
    smart00913
    Location:44 → 118
    IBN_N; Importin-beta N-terminal domain
    COG5657
    Location:35 → 814
    CSE1; CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
    sd00044
    Location:518 → 545
    HEAT; HEAT repeat [structural motif]

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    24851652..24876621
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005169283.4 → XP_005169340.1  importin-9 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BGJ6
    Conserved Domains (3) summary
    smart00913
    Location:44 → 118
    IBN_N; Importin-beta N-terminal domain
    COG5657
    Location:35 → 813
    CSE1; CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
    sd00044
    Location:517 → 544
    HEAT; HEAT repeat [structural motif]

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394821.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    33281..56363
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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