gyg1a glycogenin 1a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: gyg1aprovided by ZNC
Official Full Name: glycogenin 1aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-2910
See related: Ensembl:ENSDARG00000011934 AllianceGenome:ZFIN:ZDB-GENE-040426-2910
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: gyg; gyg1; fc13d04; fi23f07; zgc:55385; zgc:85619; wu:fc13d04; wu:fi23f07
Summary: Predicted to enable glycosyltransferase activity. Predicted to be involved in glycogen biosynthetic process. Is expressed in several structures, including female organism; immature eye; lens; liver; and myotome. Human ortholog(s) of this gene implicated in glycogen storage disease and glycogen storage disease XV. Orthologous to human GYG1 (glycogenin 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 2

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	2	NC_007113.7 (24936820..24944819)
105	previous assembly	GRCz10 (GCF_000002035.5)	2	NC_007113.6 (25281186..25289185)

Chromosome 2 - NC_007113.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fc13d04.x1 (e-PCR)
- UniSTS:203802

AI626824 (e-PCR)
- UniSTS:206132

fc33f07.x1 (e-PCR)
- UniSTS:188013

fi23f07.x1 (e-PCR)
- UniSTS:204514

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables glycogenin glucosyltransferase activity	IEA Inferred from Electronic Annotation more info
enables glycosyltransferase activity	IBA Inferred from Biological aspect of Ancestor more info
enables glycosyltransferase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in glycogen biosynthetic process	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within glycogen biosynthetic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: glycogenin-1a

Names: glycogenin 1

NP_998675.1

EC 2.4.1.186

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.