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tmub1 transmembrane and ubiquitin-like domain containing 1 [ Danio rerio (zebrafish) ]

Gene ID: 406589, updated on 19-Jun-2024

Summary

Official Symbol
tmub1provided by ZNC
Official Full Name
transmembrane and ubiquitin-like domain containing 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2504
See related
Ensembl:ENSDARG00000038787 AllianceGenome:ZFIN:ZDB-GENE-040426-2504
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:77146; wu:fa98b10
Summary
Predicted to be involved in ubiquitin-dependent ERAD pathway. Predicted to be located in cytoplasm; membrane; and nucleus. Predicted to be integral component of membrane. Orthologous to human TMUB1 (transmembrane and ubiquitin like domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See tmub1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (32561180..32574925, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (32577962..32591707, complement)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene ATP-binding cassette, sub-family F (GCN20), member 2a Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3a Neighboring gene Fas-activated serine/threonine kinase Neighboring gene uncharacterized LOC101886824

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in ERAD pathway IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within ERAD pathway IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
transmembrane and ubiquitin-like domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213298.2NP_998463.1  transmembrane and ubiquitin-like domain-containing protein 1

    See identical proteins and their annotated locations for NP_998463.1

    Status: VALIDATED

    Source sequence(s)
    BX323804, EH541175
    UniProtKB/Swiss-Prot
    Q6P135
    Related
    ENSDARP00000056641.3, ENSDART00000056642.4
    Conserved Domains (2) summary
    smart00213
    Location:151218
    UBQ; Ubiquitin homologues
    pfam00240
    Location:154219
    ubiquitin; Ubiquitin family

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    32561180..32574925 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)