U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

abcf1 ATP-binding cassette, sub-family F (GCN20), member 1 [ Danio rerio (zebrafish) ]

Gene ID: 406467, updated on 12-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
abcf1provided by ZNC
Official Full Name
ATP-binding cassette, sub-family F (GCN20), member 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-050517-31
See related
Ensembl:ENSDARG00000031795 AllianceGenome:ZFIN:ZDB-GENE-050517-31
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:85667; wu:fb79c06; wu:fc39a05; wu:fj94a08
Summary
Predicted to enable ATP binding activity. Orthologous to human ABCF1 (ATP binding cassette subfamily F member 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See abcf1 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (30428898..30447658, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (30841585..30860324, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene anterior gradient 2 Neighboring gene protein phosphatase 1, regulatory subunit 10 Neighboring gene mitochondrial ribosomal protein S18B Neighboring gene si:ch211-215a10.4 Neighboring gene BCL2 associated athanogene 6, like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene-breaking transposon mutagenesis reveals an essential role for histone H2afza in zebrafish larval development. Sivasubbu S, et al. Mech Dev, 2006 Jul. PMID 16859902
  2. A genome-wide survey of Major Histocompatibility Complex (MHC) genes and their paralogues in zebrafish. Sambrook JG, et al. BMC Genomics, 2005 Nov 4. PMID 16271140, Free PMC Article
  3. Evolutionary and Expression Analyses Show Co-option of khdrbs Genes for Origin of Vertebrate Brain. Wang S, et al. Front Genet, 2017. PMID 29354154, Free PMC Article
  4. Evolution of the vertebrate ABC gene family: analysis of gene birth and death. Annilo T, et al. Genomics, 2006 Jul. PMID 16631343
  5. Evolution of the ATP-binding cassette (ABC) transporter superfamily in vertebrates. Dean M, et al. Annu Rev Genomics Hum Genet, 2005. PMID 16124856

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ATP binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
ATP-binding cassette sub-family F member 1
Names
ATP-binding cassette 50
TNF-alpha stimulated ABC protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213186.1 → NP_998351.1  ATP-binding cassette sub-family F member 1

    See identical proteins and their annotated locations for NP_998351.1

    Status: PROVISIONAL

    Source sequence(s)
    BC068351
    UniProtKB/TrEMBL
    Q6NV15
    Related
    ENSDARP00000048976.4, ENSDART00000048977.6
    Conserved Domains (4) summary
    cd03221
    Location:336 → 557
    ABCF_EF-3; ATP-binding cassette domain of elongation factor 3, subfamily F
    COG0488
    Location:334 → 865
    Uup; ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
    pfam12848
    Location:551 → 604
    ABC_tran_Xtn; ABC transporter
    cl21455
    Location:739 → 806
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    30428898..30447658 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021468041.2 → XP_021323716.1  ATP-binding cassette sub-family F member 1 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PN87
    Conserved Domains (1) summary
    COG0488
    Location:333 → 864
    Uup; ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

  2. XM_021468042.2 → XP_021323717.1  ATP-binding cassette sub-family F member 1 isoform X2

    UniProtKB/TrEMBL
    A0A2R8QRC7, A0A8M9P1S9
    Related
    ENSDARP00000155687.1, ENSDART00000191237.1
    Conserved Domains (1) summary
    COG0488
    Location:314 → 845
    Uup; ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials
Tools
Miscellaneous