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slc7a1b solute carrier family 7 member 1b [ Danio rerio (zebrafish) ]

Gene ID: 406380, updated on 28-Oct-2024

Summary

Official Symbol
slc7a1bprovided by ZNC
Official Full Name
solute carrier family 7 member 1bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2105
See related
Ensembl:ENSDARG00000100227 AllianceGenome:ZFIN:ZDB-GENE-040426-2105
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:63694; wu:fd18f12; wu:fi40c03
Summary
Orthologous to human SLC7A1 (solute carrier family 7 member 1). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
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Genomic context

See slc7a1b in Genome Data Viewer
Location:
chromosome: 15
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (7300477..7337168, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (7304883..7340674, complement)

Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene hairy-related 8.2 Neighboring gene hairy-related 13 Neighboring gene glucan (1,4-alpha-), branching enzyme 1b Neighboring gene cell adhesion molecule 2b

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
high affinity cationic amino acid transporter 1b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001328209.1NP_001315138.1  high affinity cationic amino acid transporter 1b

    Status: PROVISIONAL

    Source sequence(s)
    CABZ01016840, FO818720
    UniProtKB/TrEMBL
    A0A0G2KSE4, A0A8M6Z2B2
    Related
    ENSDARP00000135330.1, ENSDART00000161613.2

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007126.7 Reference GRCz11 Primary Assembly

    Range
    7300477..7337168 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021481372.2XP_021337047.1  high affinity cationic amino acid transporter 1b isoform X3

    UniProtKB/TrEMBL
    A0A8M9Q094
    Conserved Domains (1) summary
    cl26159
    Location:8601
    AA_permease_2; Amino acid permease
  2. XM_068213505.1XP_068069606.1  high affinity cationic amino acid transporter 1b isoform X2

  3. XM_068213503.1XP_068069604.1  high affinity cationic amino acid transporter 1b isoform X1

  4. XM_068213504.1XP_068069605.1  high affinity cationic amino acid transporter 1b isoform X1

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_213106.1: Suppressed sequence

    Description
    NM_213106.1: This RefSeq was removed because it contains the wrong CDS.