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tmem41ab transmembrane protein 41ab [ Danio rerio (zebrafish) ]

Gene ID: 406356, updated on 17-Sep-2024

Summary

Official Symbol
tmem41abprovided by ZNC
Official Full Name
transmembrane protein 41abprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2050
See related
Ensembl:ENSDARG00000026771 AllianceGenome:ZFIN:ZDB-GENE-040426-2050
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
tmem41a; zgc:85616
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM41A (transmembrane protein 41A). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See tmem41ab in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (30422219..30438036)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (29618288..29634105)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103908879 Neighboring gene uncharacterized LOC137495518 Neighboring gene insulin-like growth factor 2 mRNA binding protein 2b Neighboring gene UBA domain containing 2 Neighboring gene G protein-coupled receptor 183b

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
transmembrane protein 41A-B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213083.1NP_998248.1  transmembrane protein 41A-B precursor

    See identical proteins and their annotated locations for NP_998248.1

    Status: PROVISIONAL

    Source sequence(s)
    BC068328
    UniProtKB/Swiss-Prot
    Q1LY83, Q6NV38
    Related
    ENSDARP00000039201.6, ENSDART00000033024.7
    Conserved Domains (1) summary
    pfam09335
    Location:96217
    SNARE_assoc; SNARE associated Golgi protein

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    30422219..30438036
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394491.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    303363..319107
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395218.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    105100..120829
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)