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LINC01561 long intergenic non-protein coding RNA 1561 [ Homo sapiens (human) ]

Gene ID: 404216, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01561provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1561provided by HGNC
Primary source
HGNC:HGNC:31365
See related
Ensembl:ENSG00000177234 AllianceGenome:HGNC:31365
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C10orf85
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Genomic context

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See LINC01561 in Genome Data Viewer
Location:
10q26.12
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (120597949..120600123)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (121493825..121496000)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (122357461..122359635)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene ribosomal protein L21 pseudogene 16 Neighboring gene NANOG hESC enhancer GRCh37_chr10:122156017-122156526 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:122263320-122264519 Neighboring gene phospholipid phosphatase 4 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:122315391-122316125 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:122334639-122335138 Neighboring gene long intergenic non-protein coding RNA 2930 Neighboring gene NANOG hESC enhancer GRCh37_chr10:122404247-122405040 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4135 Neighboring gene WDR11 divergent transcript Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:122558239-122558907 Neighboring gene H3K27ac hESC enhancers GRCh37_chr10:122610516-122611060 and GRCh37_chr10:122611061-122611604 Neighboring gene uncharacterized LOC105378519 Neighboring gene WD repeat domain 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mixomics analysis of breast cancer: Long non-coding RNA linc01561 acts as ceRNA involved in the progression of breast cancer. Jiang R, et al. Int J Biochem Cell Biol, 2018 Sep. PMID 29890225
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. Huttlin EL, et al. Cell, 2015 Jul 16. PMID 26186194, Free PMC Article
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  4. Architecture of the human interactome defines protein communities and disease networks. Huttlin EL, et al. Nature, 2017 May 25. PMID 28514442, Free PMC Article
  5. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Long non-coding RNA linc01561 acts as ceRNA involved in the progression of breast cancer
    Title: Mixomics analysis of breast cancer: Long non-coding RNA linc01561 acts as ceRNA involved in the progression of breast cancer.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Clone Names

  • FLJ37402, MGC131689

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_103717.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AC023282, AW013915, BC108662
    Related
    ENST00000369071.4

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    120597949..120600123
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    121493825..121496000
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001012711.2: Suppressed sequence

    Description
    NM_001012711.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8N1V8.1 GenPept UniProtKB/Swiss-Prot:Q8N1V8

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Chemical Information
Molecular Biology Databases
Research Materials
Miscellaneous