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SND1 staphylococcal nuclease and tudor domain containing 1 [ Bos taurus (domestic cattle) ]

Gene ID: 404098, updated on 4-Oct-2024

Summary

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Official Symbol
SND1provided by VGNC
Official Full Name
staphylococcal nuclease and tudor domain containing 1provided by VGNC
Primary source
VGNC:VGNC:35063
See related
BGD:BT25068; Ensembl:ENSBTAG00000010692
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See SND1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 4 NC_037331.1 (91873942..92296112)

Chromosome 4 - NC_037331.1Genomic Context describing neighboring genes Neighboring gene fascin actin-bundling protein 3 Neighboring gene paired box 4 Neighboring gene leucine rich repeat containing 4 Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene microRNA mir-129-1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037331.1 Chromosome 4 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tudor-SN Regulates Milk Synthesis and Proliferation of Bovine Mammary Epithelial Cells. Ao J, et al. Int J Mol Sci, 2015 Dec 16. PMID 26694361, Free PMC Article
  2. The p100 EBNA-2 coactivator: a highly conserved protein found in a range of exocrine and endocrine cells and tissues in cattle. Broadhurst MK, et al. Biochim Biophys Acta, 2005 Jan 11. PMID 15627504
  3. The p100 coactivator is present in the nuclei of mammary epithelial cells and its abundance is increased in response to prolactin in culture and in mammary tissue during lactation. Broadhurst MK, et al. J Endocrinol, 2001 Nov. PMID 11691653
  4. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC129117

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulatory ncRNA-mediated gene silencing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RISC complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
staphylococcal nuclease domain-containing protein 1
Names
100 kDa coactivator
p100 co-activator
NP_991353.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_205784.1 → NP_991353.1  staphylococcal nuclease domain-containing protein 1

    See identical proteins and their annotated locations for NP_991353.1

    Status: PROVISIONAL

    Source sequence(s)
    AY273893
    UniProtKB/Swiss-Prot
    Q3MHZ9, Q863B3
    UniProtKB/TrEMBL
    A0AAA9SP67
    Related
    ENSBTAP00000014154.5, ENSBTAT00000014154.7
    Conserved Domains (5) summary
    smart00333
    Location:728 → 784
    TUDOR; Tudor domain
    smart00318
    Location:21 → 166
    SNc; Staphylococcal nuclease homologues
    cd00175
    Location:26 → 166
    SNc; Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.
    pfam00567
    Location:677 → 799
    TUDOR; Tudor domain
    cl00140
    Location:844 → 895
    SNc; Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037331.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    91873942..92296112
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q863B3.1 GenPept UniProtKB/Swiss-Prot:Q863B3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials