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RPS3A ribosomal protein S3A [ Canis lupus familiaris (dog) ]

Gene ID: 403677, updated on 5-Mar-2024

Summary

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Gene symbol
RPS3A
Gene description
ribosomal protein S3A
See related
Ensembl:ENSCAFG00845005765
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See RPS3A in Genome Data Viewer
Location:
chromosome: 15
Exon count:
6
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 15 NC_051819.1 (49742595..49746972)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 15 NC_006597.4 (49404642..49409019)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 15 NC_049236.1 (49429825..49434209)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 15 NC_049275.1 (49011324..49015708)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 15 NC_049756.1 (49104917..49109293)

Chromosome 15 - NC_051819.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L39-like Neighboring gene uncharacterized LOC102151307 Neighboring gene small nucleolar RNA SNORD73 Neighboring gene small nucleolar RNA SNORD73 Neighboring gene SH3 domain containing 19 Neighboring gene serine protease 27 Neighboring gene serine protease 48

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A method for the large-scale cloning of nuclear proteins and nuclear targeting sequences on a functional basis. Pichon B, et al. Anal Biochem, 2000 Sep 10. PMID 10964405
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
40S ribosomal protein S3a
XP_005629388.1
XP_038352547.1
XP_038414941.1
XP_038478870.1
XP_038544534.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051819.1 Reference ROS_Cfam_1.0

    Range
    49742595..49746972
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038688606.1 → XP_038544534.1  40S ribosomal protein S3a

    UniProtKB/TrEMBL
    A0A8I3MUG5, A0A8P0NAA5, A0A8P0TSC6
    Related
    ENSCAFP00845007958.1, ENSCAFT00845010212.1
    Conserved Domains (1) summary
    pfam01015
    Location:21 → 221
    Ribosomal_S3Ae; Ribosomal S3Ae family

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049275.1 Alternate UMICH_Zoey_3.1

    Range
    49011324..49015708
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038496619.1 → XP_038352547.1  40S ribosomal protein S3a

    Conserved Domains (1) summary
    pfam01015
    Location:21 → 221
    Ribosomal_S3Ae; Ribosomal S3Ae family

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049756.1 Alternate UNSW_CanFamBas_1.0

    Range
    49104917..49109293
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038622942.1 → XP_038478870.1  40S ribosomal protein S3a

    Conserved Domains (1) summary
    pfam01015
    Location:21 → 221
    Ribosomal_S3Ae; Ribosomal S3Ae family

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049236.1 Alternate UU_Cfam_GSD_1.0

    Range
    49429825..49434209
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038559013.1 → XP_038414941.1  40S ribosomal protein S3a

    UniProtKB/TrEMBL
    A0A8I3MUG5, A0A8P0NAA5, A0A8P0TSC6
    Conserved Domains (1) summary
    pfam01015
    Location:21 → 221
    Ribosomal_S3Ae; Ribosomal S3Ae family

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006597.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    49404642..49409019
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005629331.4 → XP_005629388.1  40S ribosomal protein S3a

    See identical proteins and their annotated locations for XP_005629388.1

    UniProtKB/TrEMBL
    A0A8I3MUG5, A0A8P0NAA5, A0A8P0TSC6
    Conserved Domains (1) summary
    pfam01015
    Location:21 → 221
    Ribosomal_S3Ae; Ribosomal S3Ae family
Nucleotide Protein
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