Tigd4 tigger transposable element derived 4 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Tigd4provided by MGI
Official Full Name: tigger transposable element derived 4provided by MGI
Primary source: MGI:MGI:2685264
See related: Ensembl:ENSMUSG00000047819 AllianceGenome:MGI:2685264
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Gm418; C130063O11Rik
Summary: Predicted to enable DNA binding activity. Predicted to be active in nucleus. Is expressed in diaphragm; tongue muscle; and vertebral axis musculature. Orthologous to human TIGD4 (tigger transposable element derived 4). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: human all
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Genomic context

Location:: 3 F1; 3 37.7 cM

Exon count:: 1

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	3	NC_000069.7 (84500881..84504339)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	3	NC_000069.6 (84593574..84597032)

Chromosome 3 - NC_000069.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables DNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: tigger transposable element-derived protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_207278.2 → NP_997161.1 tigger transposable element-derived protein 4

See identical proteins and their annotated locations for NP_997161.1

Status: VALIDATED

Source sequence(s)

AC102224

Consensus CDS

CCDS17439.1

UniProtKB/Swiss-Prot

Q8BUZ3

Related

ENSMUSP00000052320.4, ENSMUST00000062623.4

Conserved Domains (3) summary

pfam03221
Location:84 → 143

HTH_Tnp_Tc5; Tc5 transposase DNA-binding domain

cl21459
Location:16 → 67

HTH; Helix-turn-helix domains

cl21549
Location:211 → 375

rve; Integrase core domain